Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16030 147 / 2e-37 CES101 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) AT4G03230 145 / 6e-37 S-locus lectin protein kinase family protein (.1) AT4G23180 143 / 1e-36 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT1G67520 141 / 3e-36 lectin protein kinase family protein (.1) AT1G61370 142 / 7e-36 S-locus lectin protein kinase family protein (.1) AT1G61390 140 / 1e-35 S-locus lectin protein kinase family protein (.1.2) AT1G11330 140 / 2e-35 S-locus lectin protein kinase family protein (.1.2) AT1G11280 139 / 9e-35 S-locus lectin protein kinase family protein (.1.2.3.4) AT1G61380 138 / 9e-35 SD1-29 S-domain-1 29 (.1) AT1G11340 137 / 2e-34 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031602 [exp] 299 / 1e-97 AT4G03230 338 / 7e-108 S-locus lectin protein kinase family protein (.1) Lus10025891 [exp] 280 / 4e-85 AT4G21380 593 / 0.0 receptor kinase 3 (.1) Lus10033743 [exp] 275 / 3e-83 AT4G21380 608 / 0.0 receptor kinase 3 (.1) Lus10031603 [exp] 271 / 6e-82 AT4G03230 558 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033741 [exp] 268 / 6e-81 AT4G21380 576 / 0.0 receptor kinase 3 (.1) Lus10015422 [exp] 252 / 8e-78 AT1G11330 324 / 5e-102 S-locus lectin protein kinase family protein (.1.2) Lus10014810 [exp] 251 / 5e-75 AT4G27290 692 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007631 [exp] 218 / 6e-64 AT4G23180 257 / 1e-76 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10028782 [exp] 219 / 7e-63 AT4G21380 649 / 0.0 receptor kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G120300 [exp] 171 / 6e-46 AT4G21380 630 / 0.0 receptor kinase 3 (.1) Potri.004G023964 [exp] 168 / 2e-45 AT4G23180 401 / 6e-132 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.013G150900 [exp] 164 / 1e-43 AT4G21390 635 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035850 [exp] 153 / 9e-42 AT4G23270 397 / 6e-134 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) Potri.011G125601 [exp] 152 / 3e-39 AT4G27290 914 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028532 [exp] 138 / 3e-38 AT4G23140 205 / 9e-63 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) Potri.019G119851 [exp] 139 / 7e-38 AT4G03230 325 / 1e-104 S-locus lectin protein kinase family protein (.1) Potri.011G035800 [exp] 147 / 1e-37 AT1G11340 705 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G039100 [exp] 147 / 1e-37 AT1G11330 859 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.004G028400 [exp] 135 / 2e-37 AT4G23140 206 / 3e-63 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10033742 pacid=23143322 polypeptide=Lus10033742 locus=Lus10033742.g ID=Lus10033742.BGIv1.0 annot-version=v1.0 ATGCCTAATAATAGCTTGGACATATTTCTCTGTCTCTCTTTACTAGATGTTGTTGATGGTTGGTTGCCTTCTGACTTCAGACCATGGTTTCCTGCTGAAC AGAATGATAACCAACTAAGCTGCTTTAAGAATGTATTGACTGTTACTGATAACTTCTCTGAATCGAACAAGTTAGGAGAGGGTGGGTTTGGTCCTGTTTA CAAGGGGAAGTTGAGTGATGATCAAGAAGTAGCAATGAAGAGGCTTTCCAAGAAATCAGGTCAAGGGTTGGAGGAATTTATGAATGAGTTGAAGCTCATA GCCAAGCTGCAGCATACCTATTTGGTCAAGCTTTTGGGGTTCTGTGTTGAGAATGAAGACAAGTTACTGATATACGAGTACATGCCTAATAAGAGCTTGG ACAAGTTTCTCTTTGAGTTGCTTTGCTCATATAGCTGCACTTGTACTGCTTATTCTTGTCAGATAAACACTTGTTTCATTTGGTCAGGGGAGCTTTTTAA TCTCCATACGCTTCGAAAAGAGCGATACAGTGAATCTGTGTACATAAGGACTGCAGGTTCTATGAATTCTGACCATGTTAGTAGCAGCAGGAATAGAGTA GTTATTGGGGTTATTGTTGCCTCTGTGGTGAGTGTAATGGCTTTGTTCCTGATATTTAGAAGAAACAGTAGGCGGAAAGCGGCAGTAAACATGGCTGAGA TTGAGAAGCACAAATATGAAATAGCGGGTGGAAATGAACAGAATAATAGCCAGTTGTGTTTTTTCAGTTTTAAAGATGTACTGGCTGCTACTGATAACTT CTCTGAATCGAATAAGTTAGGAGAGGGTGGATTTGGCCCTGTCTACAAGGGGAAGTTAAGTGATGACCAAGAAGTAGCAATGAAGAGACTTTCCAAGAAA TCTGGTCAAGGGTTAGAGGAATTTATGAATGAGTTGAAGCTCATTGCCAAGCTGCAGCATACTTATCTAGTTAGGCTATTGGGGTGCTGTGTTGAAAGGG AAGAAAAGATACTGATATATGACGGATATATGTCTCCTGAATACGCGTTCTACGGGCAGTTCTCAGAGAAATCTGACGTGTTCAGCTTTGGAGTGTTGCT ATTGGAGATAGTGAGCGGAAAGAGGAACAAAGATTTCTATCGTCGCGAAATCCCGTCGTCCCTTCTTTCTTGGGTATGGGAGTTATGGAAAGAAGGAAAA CCTGAAGGGCTGATTGATCGAGCAGTGAAGAACAGCCCCTGCTGTAATCCAACTCAAGCTATAAAGTTCATCCAAGTGGGTCTTCTGTGCGTGCAAGAAG CCCCAACTGACAGACCAACAATGTCGTCAGTAACGCTGATGTTGTTGAGTAACGATTCACAGTCATTACCGTCACCTAGAGAGCCGGCCTTCACCACTAG GAGAGGTTTTCATCCTGAGTGCAGTTATCAAGTTCCTGTGAATTGCTCAAACAACCAGGTTACAATGAGCTTGCCAACTGGTAGATGA
AA sequence Show only first row Show all	>Lus10033742 pacid=23143322 polypeptide=Lus10033742 locus=Lus10033742.g ID=Lus10033742.BGIv1.0 annot-version=v1.0 MPNNSLDIFLCLSLLDVVDGWLPSDFRPWFPAEQNDNQLSCFKNVLTVTDNFSESNKLGEGGFGPVYKGKLSDDQEVAMKRLSKKSGQGLEEFMNELKLI AKLQHTYLVKLLGFCVENEDKLLIYEYMPNKSLDKFLFELLCSYSCTCTAYSCQINTCFIWSGELFNLHTLRKERYSESVYIRTAGSMNSDHVSSSRNRV VIGVIVASVVSVMALFLIFRRNSRRKAAVNMAEIEKHKYEIAGGNEQNNSQLCFFSFKDVLAATDNFSESNKLGEGGFGPVYKGKLSDDQEVAMKRLSKK SGQGLEEFMNELKLIAKLQHTYLVRLLGCCVEREEKILIYDGYMSPEYAFYGQFSEKSDVFSFGVLLLEIVSGKRNKDFYRREIPSSLLSWVWELWKEGK PEGLIDRAVKNSPCCNPTQAIKFIQVGLLCVQEAPTDRPTMSSVTLMLLSNDSQSLPSPREPAFTTRRGFHPECSYQVPVNCSNNQVTMSLPTGR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03230			S-locus lectin protein kinase ...		Lus10033742 [exp]	0	1
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041683 [exp]	5.8	0.7767
AT5G63140		ATPAP29, PAP29	purple acid phosphatase 29 (.1...		Lus10010289 [exp]	7.1	0.7645
AT4G27300			S-locus lectin protein kinase ...		Lus10016864 [exp]	23.5	0.7290
AT4G12020	WRKY	MEKK4, MAPKKK11...	MAPK/ERK KINASE KINASE 4, MITO...		Lus10012030 [exp]	38.1	0.7423
AT5G51060		ATRBOHC, RHD2	ROOT HAIR DEFECTIVE 2, A. THAL...		Lus10022434 [exp]	62.8	0.7293
AT1G64300			Protein kinase family protein ...		Lus10032356 [exp]	67.4	0.7043
AT4G08850			Leucine-rich repeat receptor-l...		Lus10031161 [exp]	73.4	0.6739
AT1G31130			unknown protein		Lus10018940 [exp]	87.5	0.7069
AT3G60540			Preprotein translocase Sec, Se...		Lus10025029 [exp]	95.4	0.7144
AT5G07610			F-box family protein (.1)		Lus10024021 [exp]	102.0	0.7071

Compare expression of checked genes

Lus10033742 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.