Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21380 600 / 0 ARK3 receptor kinase 3 (.1) AT1G65800 589 / 0 ARK2 receptor kinase 2 (.1) AT1G65790 580 / 0 ARK1 receptor kinase 1 (.1) AT4G21390 578 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G11330 565 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G61610 554 / 0 S-locus lectin protein kinase family protein (.1) AT4G27290 552 / 0 S-locus lectin protein kinase family protein (.1) AT1G61490 547 / 0 S-locus lectin protein kinase family protein (.1) AT1G11340 546 / 0 S-locus lectin protein kinase family protein (.1) AT1G61550 540 / 0 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025891 [exp] 1151 / 0 AT4G21380 593 / 0.0 receptor kinase 3 (.1) Lus10031603 [exp] 1134 / 0 AT4G03230 558 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033741 [exp] 1089 / 0 AT4G21380 576 / 0.0 receptor kinase 3 (.1) Lus10028782 [exp] 884 / 0 AT4G21380 649 / 0.0 receptor kinase 3 (.1) Lus10039733 [exp] 867 / 0 AT4G27290 615 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039731 [exp] 852 / 0 AT1G11300 1112 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10018516 [exp] 845 / 0 AT1G11300 699 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10039767 [exp] 834 / 0 AT4G27290 588 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10015422 [exp] 640 / 0 AT1G11330 324 / 5e-102 S-locus lectin protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G120300 [exp] 652 / 0 AT4G21380 630 / 0.0 receptor kinase 3 (.1) Potri.013G150900 [exp] 633 / 0 AT4G21390 635 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.005G014900 [exp] 619 / 0 AT4G21390 660 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125601 [exp] 616 / 0 AT4G27290 914 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125050 [exp] 614 / 0 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G134900 [exp] 613 / 0 AT4G21390 662 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 612 / 0 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G409300 [exp] 611 / 0 AT4G27290 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.005G014700 [exp] 611 / 0 AT4G21390 671 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028000 [exp] 605 / 0 AT4G21380 1020 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10033743 pacid=23143240 polypeptide=Lus10033743 locus=Lus10033743.g ID=Lus10033743.BGIv1.0 annot-version=v1.0 ATGGACAATCCCCCATCAAATCTCCGTGTTCACTTCTTCACCCTCTTCCTACTGTATACACACTCCGCCCTCTCCCTCGCCGCCGACAGAATCACTCCCG ACCAACCCCTTCTCAGCAACCAAACCCTCGTCTCCGCTGCCGGCGTCTTCGAGCTCGGTTTCTTCTCTCCGGCCAACTCCAAAAACTCCTATTTAGGGAT TTGGTACCGCAACATTTCACCGCCAACCGTGGTCTGGGTTCTAAACAGGAACAATCCCATCCCCGATTCTTCTTCGTCGGAGCTCCGCATCACCAACGGC AACCTTTTTCTTTTCCAAGCCCCCGGCGTCCCAATCTGGGCGGCGGATGCTGCTACCATACGGCCCGTACCATTGGGCCGTACTTCGGCTCTGGAAGCTG TTCTCCAGGAGGATGGCAATTTCGTAATGAAACTTTCCAATTCGACTTCTGTTCCACAGTGGCAGAGCTTCGATTACCCTACGGATACACTTGTTCCGGG GCAAAAGCTCGGGAGGAAGAAGATGAACAACGAATTCACGAGCCTAGTTTCCTGGAGCAGCGAATCGGATCCAGCTCAAGGCGGTTACTCCCTCCAATTA GACCCCAAAGGGACGATTCAATACGTAACTCTTTACAACAACAACTCCACCATGTACTCGATTCCCGGGAGGGAGCTGATGAACAACGATTCCTACACTG AGAACGACGGCGAAGTTTACTTCTCCTTCAGCGGTAATGGTGGGGTTGCTCTTTCTCGAATCGTCCTGAACAGTAAAGGAATGGTTCAGGGACTTTCCTG GGCTGAAGGTTCGGATACGTGGCTCGTAAATTGGCAGGAGCCACGCGATCAATGTCAGGTATTTGGCTACTGTGGCCCATTTGGAAGCTGCGACATTGAT TCTAGTCCTTTGTGTAGCTGTCCAACAGGGTTCATTCCGAAATCGGAGAAAGAATGGAGCTTGGGAGATTTCTCCAGGGGTTGCTTGAGGAAGTCTAGGC TGGGATGCAGGGATTCCGGAGCAGGTAATGATATGTTTGTTCCGGGTTATGGATTGCCTGACGAAGGTGCGCAACTGTCAGTTGGGGGGTTACGTTATTC AGTAGATAGTGCTCAGCAATGTGAATCTGTTTGCTCTTACAGCTGCAATTGTACTGCTTATTCTTACCAGAGAAGTGGGTGTTCCATTTGGTCAGGGGAA TTTTTTAATCTCCGTACGCTTCAAAAAGATCGATACAATCAATCTGTGTACATAAGGATTGCAGGTTCTGAGAAACCTGATGGTGTTAGTAGCAGAAAGA GTAGAGTAGTTATTGGGGCTATTGTTGGCTCTGTGGTGACTGGTATTCTAGTTAGCCTTCTGGCTTTGGTCTTGATATTGAGAAGAAACAGCAGGCGGAA AGCAGCGGTAAACATGGCTGAGATCGAGAACGAGAAGAATAGGTATGGAATTGTGGGAGGGGATGGCCAGAATAATACTCAGCTGAGTTTTTTTAGCTTT AAAGATGTGTTAGTTGCTACTGATAACTTCTCTGAATCCAATAAGTTGGGAGAGGGTGGGTTTGGTCCTGTTTACAAGGGGAAGTTGAGTGATGATCAAG AAGTAGCAATGAAGAGGCTTTCCAAGAAATCAGGTCAAGGGTTGGAGGAATTTATGAATGAGTTGAAGCTCATAGCCAAGCTGCAGCATACCTATTTGGT CAGGCTATTGGGGTGCTGTGTTGAGAATGAAGAAAAGATACTGATATATGAGTACATGCCTAATAAGAGCTTGGACAAGTTTCTCTTTGGGTCATCTGAT AATGCGAAGCTAGACTGGGGACAGCGAGTAAAAATCACCGAAGGTGTAGCTCAAGGATTGCTATACATCCACAAGTATTCAAGGCTGAAAGTCATTCACA GGGACATGAAGGCAAGCAATGTTTTGCTGGACGCAGCGATGAATCCCAAGATATCAGACTTTGGGATGGCTCGAATTTTCGGGATTGATCAGGATGAAGC AAGTACAAACCGTATAGTTGGCACATACGGATACATGTCTCCAGAATACGCAAACTATGGGCAGTTCTCGGAGAAATCAGATGTGTTTAGCTTTGGAGTG TTGTTATTGGAGATAGTGATTGGAAAGAGGAATAAAGATTTCTATCATCACGAAATCCCGTTCTCCCTTCTATGTTGGGTATGGGAGCTATGGAAAGAAG GGAAACCTGAAGAGCTGATTGATCCAGCAGTGAAGAACAGCCCCTGCTGCAATCCAACTGAAGCTGTAAAGTTGGTCCAAGTGGGTCTTTTGTGTGTGCA AGAAGCTCCAGCTGATAGGCCAACAATGTCTTTAGTAACTCAGATGCTGTCGAGTAACGATTCTCAGTCATTTCCGTTGCCTCGAGAACCAGCCTTCATG GCTAGGAGAGCTGCTGCTGTTGAGATCAGTGATCAAGTTCCAGTTAACTTTTCAAACAACCAGTTAACTATTAGCTTACCAACTGGGAGATGA
AA sequence Show only first row Show all	>Lus10033743 pacid=23143240 polypeptide=Lus10033743 locus=Lus10033743.g ID=Lus10033743.BGIv1.0 annot-version=v1.0 MDNPPSNLRVHFFTLFLLYTHSALSLAADRITPDQPLLSNQTLVSAAGVFELGFFSPANSKNSYLGIWYRNISPPTVVWVLNRNNPIPDSSSSELRITNG NLFLFQAPGVPIWAADAATIRPVPLGRTSALEAVLQEDGNFVMKLSNSTSVPQWQSFDYPTDTLVPGQKLGRKKMNNEFTSLVSWSSESDPAQGGYSLQL DPKGTIQYVTLYNNNSTMYSIPGRELMNNDSYTENDGEVYFSFSGNGGVALSRIVLNSKGMVQGLSWAEGSDTWLVNWQEPRDQCQVFGYCGPFGSCDID SSPLCSCPTGFIPKSEKEWSLGDFSRGCLRKSRLGCRDSGAGNDMFVPGYGLPDEGAQLSVGGLRYSVDSAQQCESVCSYSCNCTAYSYQRSGCSIWSGE FFNLRTLQKDRYNQSVYIRIAGSEKPDGVSSRKSRVVIGAIVGSVVTGILVSLLALVLILRRNSRRKAAVNMAEIENEKNRYGIVGGDGQNNTQLSFFSF KDVLVATDNFSESNKLGEGGFGPVYKGKLSDDQEVAMKRLSKKSGQGLEEFMNELKLIAKLQHTYLVRLLGCCVENEEKILIYEYMPNKSLDKFLFGSSD NAKLDWGQRVKITEGVAQGLLYIHKYSRLKVIHRDMKASNVLLDAAMNPKISDFGMARIFGIDQDEASTNRIVGTYGYMSPEYANYGQFSEKSDVFSFGV LLLEIVIGKRNKDFYHHEIPFSLLCWVWELWKEGKPEELIDPAVKNSPCCNPTEAVKLVQVGLLCVQEAPADRPTMSLVTQMLSSNDSQSFPLPREPAFM ARRAAAVEISDQVPVNFSNNQLTISLPTGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10033743 [exp]	0	1
AT5G51970			GroES-like zinc-binding alcoho...		Lus10031660 [exp]	1.0	0.9779
AT4G01870			tolB protein-related (.1)		Lus10038052 [exp]	2.0	0.9721
AT5G57260		CYP71B10	"cytochrome P450, family 71, s...		Lus10030189 [exp]	2.2	0.9700
AT2G14440			Leucine-rich repeat protein ki...		Lus10041860 [exp]	2.6	0.9684
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10021102 [exp]	3.5	0.9707
AT4G27290			S-locus lectin protein kinase ...		Lus10038552 [exp]	3.5	0.9708
AT2G21620		RD2	Adenine nucleotide alpha hydro...		Lus10042316 [exp]	4.2	0.9579
					Lus10038520 [exp]	4.5	0.9648
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10015188 [exp]	4.7	0.9627
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10040271 [exp]	4.8	0.9515

Compare expression of checked genes

Lus10033743 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.