Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03010 229 / 3e-73 RNI-like superfamily protein (.1) AT1G03440 222 / 2e-70 Leucine-rich repeat (LRR) family protein (.1) AT3G17640 114 / 4e-29 Leucine-rich repeat (LRR) family protein (.1) AT3G59510 99 / 9e-24 Leucine-rich repeat (LRR) family protein (.1) AT4G22730 99 / 3e-23 Leucine-rich repeat protein kinase family protein (.1) AT2G15320 92 / 3e-21 Leucine-rich repeat (LRR) family protein (.1) AT5G51560 90 / 4e-20 Leucine-rich repeat protein kinase family protein (.1) AT3G12610 87 / 1e-19 DRT100 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) AT3G47110 84 / 4e-18 Leucine-rich repeat protein kinase family protein (.1) AT5G49750 83 / 7e-18 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031601 [exp] 324 / 1e-110 AT1G03440 463 / 2e-163 Leucine-rich repeat (LRR) family protein (.1) Lus10029622 [exp] 270 / 5e-89 AT1G03440 534 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10008190 [exp] 243 / 2e-78 AT1G03440 576 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10042681 [exp] 165 / 1e-49 AT4G03010 205 / 1e-63 RNI-like superfamily protein (.1) Lus10004032 [exp] 98 / 7e-23 AT2G45340 747 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030279 [exp] 97 / 1e-22 AT2G45340 648 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038392 [exp] 96 / 4e-22 AT4G20140 1376 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10031703 [exp] 96 / 6e-22 AT5G51560 851 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10036251 [exp] 96 / 6e-22 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G136100 [exp] 231 / 5e-74 AT1G03440 541 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.011G023500 [exp] 127 / 7e-34 AT3G17640 350 / 2e-118 Leucine-rich repeat (LRR) family protein (.1) Potri.004G001000 [exp] 117 / 3e-30 AT3G17640 386 / 1e-132 Leucine-rich repeat (LRR) family protein (.1) Potri.015G130100 [exp] 98 / 7e-23 AT5G51560 940 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G188700 [exp] 94 / 2e-21 AT5G48940 1011 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.003G115100 [exp] 91 / 2e-20 AT4G22730 788 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G155600 [exp] 87 / 3e-19 AT1G53440 596 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.008G125600 [exp] 86 / 4e-19 AT1G79620 448 / 4e-149 Leucine-rich repeat protein kinase family protein (.1) Potri.001G301400 [exp] 86 / 7e-19 AT2G15320 429 / 6e-150 Leucine-rich repeat (LRR) family protein (.1) Potri.016G011200 [exp] 86 / 1e-18 AT1G53440 600 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10033744 pacid=23143461 polypeptide=Lus10033744 locus=Lus10033744.g ID=Lus10033744.BGIv1.0 annot-version=v1.0 ATGCCCGGGTCAAACTTCTTCTCAACCTGGGACTTCACTGGCGACCCCGGCAACTTCACCGGCGTTTCCTGTCAGTCCGACCGGGTCGTCTCTCTCAATC TGGGCGACCCGAGAGCCGGCTCATTAGGTCTGACCAGAAAGCTCGACCCGATCATCGGCAACCTCACTGCTCTAACCGAGCTCATCATAGTTTCAGGTCA TGTCAGGGGCTCGTTACCCGACTCCATCTCCCAGCTCACGGAGCTCAAATTCTTAGCGATCAACCGGAATTACCTCACCGGCACCATTCCCGATTCCATC TCCCGTCTCGTTAGTCTCGAAACCCTTGATCTCGGGTACAACCAGCTCCCCGGAACTTTCCCGCCGTCGATCGGTTCTATACCGGGTCTATCCAATCTCA TCCTGAAACATAACCCGCAGTCAGGTTCGGTTTCTGAATTCGGGTCTCGGAACAGCCTGACCCGACTCGATTTGTCTCACAACCAGCTCAATGGCTCTAT TCTTCCCTCCTCATTTTCTTCCTCGGCTCAGTACCTATCTCTCTCCTGGAACCGGCTAGTCGGACCGGTGGACAGCGACCTGGCCCGACTAGATCGGCTA AACTATCTCGACCTAAACTCGAACCGGAGCCGGTTCGATCCCAGATCGAATCGTTACATTTCCGATTACCAACATCCAATTGAATCGGAACTTGTTCACC GGTCGAGTTCAACCCGTCGGCCAGGTGTCGATCCCGACAGTCGATCTCAGCTACAACAGATTTTACGGTCTGATATCGCCGATGTTTTCTACGGTGCAGA ATCTGTATCTGAATAG
AA sequence Show only first row Show all	>Lus10033744 pacid=23143461 polypeptide=Lus10033744 locus=Lus10033744.g ID=Lus10033744.BGIv1.0 annot-version=v1.0 MPGSNFFSTWDFTGDPGNFTGVSCQSDRVVSLNLGDPRAGSLGLTRKLDPIIGNLTALTELIIVSGHVRGSLPDSISQLTELKFLAINRNYLTGTIPDSI SRLVSLETLDLGYNQLPGTFPPSIGSIPGLSNLILKHNPQSGSVSEFGSRNSLTRLDLSHNQLNGSILPSSFSSSAQYLSLSWNRLVGPVDSDLARLDRL NYLDLNSNRSRFDPRSNRYISDYQHPIESELVHRSSSTRRPGVDPDSRSQLQQILRSDIADVFYGAESVSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03010			RNI-like superfamily protein (...		Lus10033744 [exp]	0	1
AT5G60330			unknown protein		Lus10018274 [exp]	3.0	0.9849
					Lus10002570 [exp]	5.3	0.9676
AT5G49340		TBL4	TRICHOME BIREFRINGENCE-LIKE 4 ...		Lus10037726 [exp]	5.7	0.9818
					Lus10032468 [exp]	6.7	0.9741
AT3G19020			Leucine-rich repeat (LRR) fami...		Lus10012047 [exp]	7.2	0.9838
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10016284 [exp]	8.3	0.9835
AT2G28085			SAUR-like auxin-responsive pro...		Lus10021435 [exp]	10.0	0.9814
AT4G28110	MYB	ATMYB41	myb domain protein 41 (.1)		Lus10033738 [exp]	11.0	0.9739
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10035169 [exp]	11.0	0.9766
AT5G07380			unknown protein		Lus10043018 [exp]	11.1	0.8742

Compare expression of checked genes

Lus10033744 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.