Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03610 79 / 1e-15 Protein of unknown function (DUF789) (.1) AT1G15030 79 / 2e-15 Protein of unknown function (DUF789) (.1) AT2G01260 79 / 2e-15 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) AT1G73210 72 / 1e-13 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) AT4G03420 71 / 5e-13 Protein of unknown function (DUF789) (.1) AT4G16100 71 / 5e-13 Protein of unknown function (DUF789) (.1) AT1G17830 70 / 1e-12 Protein of unknown function (DUF789) (.1) AT5G49220 69 / 3e-12 Protein of unknown function (DUF789) (.1) AT4G28150 66 / 2e-11 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) AT5G23380 66 / 2e-11 Protein of unknown function (DUF789) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031598 [exp] 1102 / 0 AT1G15030 63 / 2e-10 Protein of unknown function (DUF789) (.1) Lus10017987 [exp] 213 / 5e-60 AT2G01260 77 / 1e-14 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Lus10041982 [exp] 209 / 2e-58 AT2G01260 79 / 2e-15 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Lus10018572 [exp] 74 / 8e-14 AT4G03420 405 / 1e-142 Protein of unknown function (DUF789) (.1) Lus10033707 [exp] 73 / 1e-13 AT4G03420 359 / 2e-124 Protein of unknown function (DUF789) (.1) Lus10037716 [exp] 69 / 3e-12 AT4G16100 311 / 4e-103 Protein of unknown function (DUF789) (.1) Lus10031632 [exp] 68 / 4e-12 AT4G03420 345 / 2e-119 Protein of unknown function (DUF789) (.1) Lus10037717 [exp] 69 / 7e-12 AT4G16100 321 / 2e-103 Protein of unknown function (DUF789) (.1) Lus10036189 [exp] 67 / 2e-11 AT1G73210 298 / 2e-99 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G149400 [exp] 280 / 3e-84 AT1G15030 82 / 2e-16 Protein of unknown function (DUF789) (.1) Potri.019G119100 [exp] 242 / 2e-74 AT2G01260 84 / 1e-17 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Potri.017G152601 [exp] 256 / 1e-73 AT1G03610 95 / 9e-21 Protein of unknown function (DUF789) (.1) Potri.004G068700 [exp] 235 / 3e-66 AT1G73210 100 / 2e-22 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) Potri.013G144000 [exp] 75 / 2e-14 AT4G03420 414 / 2e-146 Protein of unknown function (DUF789) (.1) Potri.010G120700 [exp] 75 / 4e-14 AT2G01260 367 / 1e-125 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Potri.008G124000 [exp] 74 / 8e-14 AT2G01260 384 / 1e-132 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Potri.019G103000 [exp] 73 / 8e-14 AT4G03420 427 / 2e-151 Protein of unknown function (DUF789) (.1) Potri.010G000700 [exp] 67 / 1e-11 AT5G49220 342 / 3e-115 Protein of unknown function (DUF789) (.1) Potri.008G213300 [exp] 67 / 1e-11 AT5G49220 338 / 2e-113 Protein of unknown function (DUF789) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05623 [flax] [poplar] DUF789 Protein of unknown function (DUF789)
Representative CDS sequence Show only first row Show all	>Lus10033747 pacid=23143426 polypeptide=Lus10033747 locus=Lus10033747.g ID=Lus10033747.BGIv1.0 annot-version=v1.0 ATGGAGAAAGTCTCGACTACTGGACCATTGTCTGAAATCAAGCAGCCGAAAGCCGGCAAGGGTAAGAATCGGAAGTCTTACAGGAGGGCCATGGTTGCTG TTTCAGATTCCAGTAATCATCACAATGGATATGGAGATTCCTGTGTAGGGAAAGGGCAGGAGAATTGCTTGAAGAATCAGTGGAGTAGTGTCAGATCATA CTGCCGTCAAATGAAGGAAGGTGGTCACCGGGACAAGAAAATATCAGTTGGGAAGGACCATTATGGTTCAGACAGAGTTGAAGTCGATTACTGGAAAGCA AATGATCCTGGAAGCCCTACACTGAATTGGCATTTCTCATTGGAGAGCTCTTCTGCAAATTTCTGTAGCCAGCCTGCTCCGTCTCATGGCTTCCAGTACT TGAATACAGATGAACATAAGGGAGTAGTACCGAGATTGAGTGTACCGTATCGTGGTGGAGGGATGAATCGGGCTGCCCATTCTGCAACATACAAGTCATT CCATGCTTCTATGTACAGTAGATCAAGCATGGTGTTCAATCATCATTGTCGAGCAAACCCAGTAAAGTGGGTTCCGGTTGCTGCAGCCAAAGCATCTGAG ATACTGCAAAAAGTTCATGGAGGTACAAACTTTGCTTCTCATTCTAATGAGAAAATCCCTTCTAGGACTGATAAAACAAAAACGAAAGAAAAAGTAGACA CTGTTTGTAAGAAACCTGCAGTAGTAGAAAGTGAACCTTTAAAACCATGTGAGAATGATGTCAGAAGGGATGAACCTAAATCCGAGAGTCCGAAGAAAGG CGGAGTAGCTTATGCTGAAACTCAAAAGGAAACTGATGAATTCGTTGGATCGCGAGCAGTGATAGAGTATCTAACAGCAGCTTACAAACAGCAACTTTTG TCTGAGATCATCCAGTTCACTGTGGGATATCCACTTGCAGACTTTGAAACATTTATCAAGTCTTCATCGCCAGTTATCACGTCGTCTGTTAGCTCTGTAT GTGAACGCGAGATGCAAAATGTATCGCTTTCTGGTCTCTGGAACTGGTACGAGAAGCCAGGAAGTTGTGGGTTAAAAGTCAGGATAGAACCTTGTCAAGA TCTGAATGGCTTCTTCGATGAGAAAGCACTGTTCGATGCACATTTCGTTCCTTCTCTTTCGGCTGTTCAGTTGTTTGGCTACCCAGTTCACCTAAATTCA GAGGCTAAGAGTCAAGAATCTACTTCACCAAAGCCAGCTGCAAAATCTGACACATGTGGCCAGAAAGTTCTATTTTCTAATGTTTTCCAATGCACTAACC ATGGTAAGGTTAAATTGATTTCTTCATCACCCTGCTCGGGCAATCCAGAACTTCTGTTCGAGTTCTTCGAATCGGAGCAGCCATATAATCGAAAGCCTCT TCACCTGAAAATTATGGAGCTTACCGAATCTGGAACTTCTAATAGTCAAGTATATGGAGATCCACAGAAGCTAGTATCACTGACGCTGAATGAATTGCAC CCTGCCTCGTGGTTCTCTGTGGCCTGGTATCCGATATACCGAATACCAGAGGGGAAATTGCGTTCGTCGTTTCTCACATACCATTCTCTCGGCCATTACG TAACAAAAGGAGGCTTTCCTGTTTACTCTTCCAGTAACATGACTTCCCAAACTCTCTTCCCTGCAGTAGGATTACAAAGCCTTAACACACAGGGGGAATG CTGGTTTGATTTGAAAAGACGATTCGAGAACTCTCCGAAACAATCAGTTGGAGATTCTGAAATTCTCAAGAGAAGACTCCAAACCCTTGAGGGGAATGCA TCACTTCTTGCTAGAGGCTGTGTAACCAAAGGTAACATCAAGGTGACAAATAGGCAGTCAGATTACGAGTTCTTCGTTTCTCGGAAGCGCTGA
AA sequence Show only first row Show all	>Lus10033747 pacid=23143426 polypeptide=Lus10033747 locus=Lus10033747.g ID=Lus10033747.BGIv1.0 annot-version=v1.0 MEKVSTTGPLSEIKQPKAGKGKNRKSYRRAMVAVSDSSNHHNGYGDSCVGKGQENCLKNQWSSVRSYCRQMKEGGHRDKKISVGKDHYGSDRVEVDYWKA NDPGSPTLNWHFSLESSSANFCSQPAPSHGFQYLNTDEHKGVVPRLSVPYRGGGMNRAAHSATYKSFHASMYSRSSMVFNHHCRANPVKWVPVAAAKASE ILQKVHGGTNFASHSNEKIPSRTDKTKTKEKVDTVCKKPAVVESEPLKPCENDVRRDEPKSESPKKGGVAYAETQKETDEFVGSRAVIEYLTAAYKQQLL SEIIQFTVGYPLADFETFIKSSSPVITSSVSSVCEREMQNVSLSGLWNWYEKPGSCGLKVRIEPCQDLNGFFDEKALFDAHFVPSLSAVQLFGYPVHLNS EAKSQESTSPKPAAKSDTCGQKVLFSNVFQCTNHGKVKLISSSPCSGNPELLFEFFESEQPYNRKPLHLKIMELTESGTSNSQVYGDPQKLVSLTLNELH PASWFSVAWYPIYRIPEGKLRSSFLTYHSLGHYVTKGGFPVYSSSNMTSQTLFPAVGLQSLNTQGECWFDLKRRFENSPKQSVGDSEILKRRLQTLEGNA SLLARGCVTKGNIKVTNRQSDYEFFVSRKR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15030			Protein of unknown function (D...		Lus10033747 [exp]	0	1
AT2G39740		HESO1	HEN1 suppressor 1, Nucleotidyl...		Lus10001012 [exp]	2.0	0.9239
AT5G67380		ATCKA1, CKA1	casein kinase alpha 1 (.1.2)		Lus10032849 [exp]	2.4	0.9133
AT3G54380		AtSAC3C	yeast Sac3 homolog C, SAC3/GAN...		Lus10024110 [exp]	3.0	0.9062
AT1G49350			pfkB-like carbohydrate kinase ...		Lus10009862 [exp]	4.2	0.8767
AT5G61240			Leucine-rich repeat (LRR) fami...		Lus10037108 [exp]	7.7	0.8846
AT1G59520		CW7	CW7 (.1.2.3)		Lus10012485 [exp]	8.9	0.8702
AT1G68910		WIT2	WPP domain-interacting protein...		Lus10013053 [exp]	13.5	0.8649
AT3G62140			unknown protein		Lus10038035 [exp]	14.5	0.8796
AT4G31150			endonuclease V family protein ...		Lus10000685 [exp]	14.5	0.8645
AT2G39740		HESO1	HEN1 suppressor 1, Nucleotidyl...		Lus10030154 [exp]	14.8	0.8871

Compare expression of checked genes

Lus10033747 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.