Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19130 649 / 0 S-locus lectin protein kinase family protein (.1) AT4G00340 386 / 2e-122 RLK4 receptor-like protein kinase 4 (.1) AT5G24080 331 / 2e-105 Protein kinase superfamily protein (.1) AT4G11900 338 / 1e-103 S-locus lectin protein kinase family protein (.1) AT1G61480 325 / 4e-99 S-locus lectin protein kinase family protein (.1) AT1G61440 322 / 4e-98 S-locus lectin protein kinase family protein (.1) AT1G61490 320 / 2e-97 S-locus lectin protein kinase family protein (.1) AT1G61500 320 / 3e-97 S-locus lectin protein kinase family protein (.1) AT1G61430 318 / 1e-96 S-locus lectin protein kinase family protein (.1) AT1G34300 318 / 1e-96 lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031596 [exp] 674 / 0 AT2G19130 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10042266 [exp] 583 / 0 AT2G19130 775 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039732 [exp] 572 / 0 AT2G19130 647 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039762 [exp] 476 / 6e-157 AT2G19130 621 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10029802 [exp] 472 / 3e-155 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10026390 [exp] 367 / 8e-121 AT2G19130 317 / 3e-101 S-locus lectin protein kinase family protein (.1) Lus10039733 [exp] 379 / 3e-119 AT4G27290 615 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10028782 [exp] 365 / 4e-114 AT4G21380 649 / 0.0 receptor kinase 3 (.1) Lus10033741 [exp] 350 / 1e-108 AT4G21380 576 / 0.0 receptor kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G119200 [exp] 745 / 0 AT2G19130 874 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G121000 [exp] 689 / 0 AT2G19130 863 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G149500 [exp] 639 / 0 AT2G19130 838 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.014G086900 [exp] 432 / 3e-139 AT4G00340 862 / 0.0 receptor-like protein kinase 4 (.1) Potri.011G038800 [exp] 348 / 9e-108 AT1G11330 838 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.015G026300 [exp] 346 / 1e-106 AT5G24080 684 / 0.0 Protein kinase superfamily protein (.1) Potri.011G125401 [exp] 340 / 7e-105 AT4G27290 824 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.018G027300 [exp] 330 / 5e-101 AT4G32300 1012 / 0.0 S-domain-2 5 (.1) Potri.001G412100 [exp] 329 / 1e-100 AT1G11330 600 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.006G254600 [exp] 329 / 1e-100 AT4G32300 965 / 0.0 S-domain-2 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10033748 pacid=23143431 polypeptide=Lus10033748 locus=Lus10033748.g ID=Lus10033748.BGIv1.0 annot-version=v1.0 ATGGAGAATCCACGGAACTTACTCGGCTCCCTCTTCTTTCTCACCTTCTTCCTACTAACCCACCTCTCCACCGCCGCCGACAGGATCACACCCGACACCC CCCTCTCCGGCGACCAAACCATCTCCTCCGCCGGAAACGTCTTCGTTCTCGGCTTCTTCCGTCCATCAGAAAATTCCACCAGGTACTACATCGGAATCTG GTACAACCAAACCATCGTCTCCACTCAAACAGTCGTCTGGGTCGCAAACAGGGGATCCCCTGTTTCCGACCGGTTCTCCTCGGAGCTCCGTATCTCCGGC GGTAACCTCGTCCTCGTCAATGAATCCAGAGTCCCAATCTGGTCAACGGGATTAAACAGAAGCAGCTCCTCCTCGACAGTCGACGCTGTCCTCCTCGACC AGGGGAATCTCGTTCTGCTTCCGAACGGGTCGTACCCGAATCCGAATTTGAACTCGTCGTCGGACTCGTTCCGGCCGACGTGGCAGAGCTTCGACAACCC GGGGGACACGTGGCTGCCGGGAGGCAAAATCGGGCTGAAAAAGGTGGACAAAACGTCGACATTTCTCACGTCGTGGAAGAACACCGAAGACCCGACACCC GGCCCGTTTACGCTGGAGCTCGACCCGAACGGAACCAGCCAGTACTTCATCTTCTGGTACAAAACAGAGAATTANNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNGGTTCATTGTGAGGTTTACGGCTACTGCGGCGGATTTGGAAGCTGTACGGAGAGGAGCCAGCCGTTCTGCAGCTGTTTGCCCGGGTTCGTACC GAAATCGGCGGAGGATTATCAGTCGAACGTCTTTTACGGCGGATGCGTCAGGAGGACGAGCCTCCAGTGCGAGAAAAACAATTCGAGCGTCGGCTCCGGT GAGAATCGAGATGGGTTTTCGCAGAATTTGGACATGCAGTTGCCGAAGAATCCGGTGACGGTGGCGGCCGGCGGTGGGAGCTTGGAGGACTGCGAGGCGG CTTGTTTGAGGAACTGTTCGTGCTCTGCTTATTCTTATGATGAAGGAAACAATCAGTGTTCTGTTTGGTATGGGGAGCTTCTGAATTTGAAAGACGGCGG TGGGAAGACTATTTATGTGAAGCTTGCAGCTTCTGAGATTTCTAACGGGAAGAAAAGTAACAGTAACGGAGTTGTGATCGGTGCCGTAGTGGGATCGATC GGATTCGTCGCCATTGTTGGGTTAATCGTGTTCATTGTGTTGAGGAGGAAGAGGAGAAGACTGGTGAAGCCTGGGAAAGCAGTGGAAGGGTCGTTAATGG CGTTTACATACAGGGAAATGCAGAATGCGACGAGGAATTTCTCCGAGAAGCTCGGAGGAGGAGGGTTCGGCAACGTCTTCAAAGGCATCCTGTCTGATTC GACGGCCATAGCAGTGAAGAAGCTGGAGAGCATTAGTCAAGGGGAGAAGCAGTTTAGGACTGAAGTGAGCACGATCGGCACGATCCAGCATGTTAATCTG GTTCGACTTCGAGGATTCTGTTCCGAAGGTGCGACGAAGAGGCTGTTGGTTTACGATTACATGCCGAATAGTTCCCTCGATCACCATCTGTTTAAGAAGG GCGGCGAGGAGGTTCTGGACTGGCGGACTAGGTACAGTATAGCTCTGGGGACGGCTAGAGGGCTGACGTATCTTCACGAGAAATGTCGGGATTGCATCAT ACATTGCGACATCAAGCCGGAGAACATCCTTCTGGACGCCGAAATGTGTCCGAAAGTTGCGGATTTCGGGCTGGCCAAGCTCGTGGGGCGAGATTTCAGC AGGGTGCTGACGACCATGAGAGGGACTCGAGGGTACCTCGCGCCAGAATGGATTTCGGGAGTGGCAATTACCGCTAAGGCCGATGTTTACAGTTACGGAA TGATGCTGTTCGAGTTCGTGTCGGGAAGGAGGAACACGGATCAAGCGGATGATGGGAAGTTCCGATTCTTCCCGAGCTGGGCTGCCAGCGTGATATCCGA CAGAGGCGACATTCTCAACTTGCTTGATCCAAAGCTGGAAGGAAATGCTGATCGGGAAGAGCTTTCCAGAGTCTGCAATCTCGCTTTCTGGTGCATCCAA GATGACGAGATGCAGAGGCCTTCCATGGGGCAGGCAGTTCAGGTCCTCGAGAGGATCTTGAACGTCGACCTGCCGCCTTTCCCCAGATCTCTCAAGGTGT TTGAGGACAATCCGGAGAATGTCGTCTTCTTCAAGAACGAATCGTCCACTACCCAGAGCTCGCAAACACGAAGCAATCCTTCTGCTGTTTCGTCTCAGAC AAAGAGCAGCACATCGTCGATTTCCTAA
AA sequence Show only first row Show all	>Lus10033748 pacid=23143431 polypeptide=Lus10033748 locus=Lus10033748.g ID=Lus10033748.BGIv1.0 annot-version=v1.0 MENPRNLLGSLFFLTFFLLTHLSTAADRITPDTPLSGDQTISSAGNVFVLGFFRPSENSTRYYIGIWYNQTIVSTQTVVWVANRGSPVSDRFSSELRISG GNLVLVNESRVPIWSTGLNRSSSSSTVDAVLLDQGNLVLLPNGSYPNPNLNSSSDSFRPTWQSFDNPGDTWLPGGKIGLKKVDKTSTFLTSWKNTEDPTP GPFTLELDPNGTSQYFIFWYKTENXXXXXXXXXXXXVHCEVYGYCGGFGSCTERSQPFCSCLPGFVPKSAEDYQSNVFYGGCVRRTSLQCEKNNSSVGSG ENRDGFSQNLDMQLPKNPVTVAAGGGSLEDCEAACLRNCSCSAYSYDEGNNQCSVWYGELLNLKDGGGKTIYVKLAASEISNGKKSNSNGVVIGAVVGSI GFVAIVGLIVFIVLRRKRRRLVKPGKAVEGSLMAFTYREMQNATRNFSEKLGGGGFGNVFKGILSDSTAIAVKKLESISQGEKQFRTEVSTIGTIQHVNL VRLRGFCSEGATKRLLVYDYMPNSSLDHHLFKKGGEEVLDWRTRYSIALGTARGLTYLHEKCRDCIIHCDIKPENILLDAEMCPKVADFGLAKLVGRDFS RVLTTMRGTRGYLAPEWISGVAITAKADVYSYGMMLFEFVSGRRNTDQADDGKFRFFPSWAASVISDRGDILNLLDPKLEGNADREELSRVCNLAFWCIQ DDEMQRPSMGQAVQVLERILNVDLPPFPRSLKVFEDNPENVVFFKNESSTTQSSQTRSNPSAVSSQTKSSTSSIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19130			S-locus lectin protein kinase ...		Lus10033748 [exp]	0	1
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Lus10012751 [exp]	1.0	0.7264
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10030368 [exp]	12.4	0.6641
AT1G71140			MATE efflux family protein (.1...		Lus10018136 [exp]	13.8	0.5882
AT4G27460			Cystathionine beta-synthase (C...		Lus10025651 [exp]	16.7	0.6127
AT5G11670		ATNADP-ME2	Arabidopsis thaliana NADP-mali...		Lus10005483 [exp]	19.1	0.6060
AT2G29980		AtFAD3, FAD3	fatty acid desaturase 3 (.1.2)		Lus10036184 [exp]	24.6	0.6260
AT4G27290			S-locus lectin protein kinase ...		Lus10014812 [exp]	58.5	0.5708
AT1G21750		ATPDI5, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10029681 [exp]	67.1	0.4837
AT1G71460			Pentatricopeptide repeat (PPR-...		Lus10041049 [exp]	72.8	0.5285
AT2G19170		SLP3	subtilisin-like serine proteas...		Lus10040146 [exp]	125.3	0.4861

Compare expression of checked genes

Lus10033748 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.