Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11360 201 / 3e-64 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) AT5G54430 177 / 6e-55 ATPHOS32 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT4G27320 169 / 2e-51 ATPHOS34 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT3G21210 113 / 4e-28 zinc ion binding (.1) AT3G17020 50 / 1e-07 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT3G03270 49 / 3e-07 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) AT3G62550 44 / 4e-05 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT2G24370 42 / 0.0003 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G09740 41 / 0.0003 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT4G31230 41 / 0.001 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031594 [exp] 377 / 3e-133 AT1G11360 257 / 2e-86 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Lus10039730 [exp] 252 / 2e-83 AT1G11360 288 / 3e-98 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Lus10037867 [exp] 169 / 1e-49 AT1G11360 244 / 1e-78 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Lus10038561 [exp] 150 / 3e-44 AT1G11360 224 / 7e-74 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Lus10018515 [exp] 86 / 5e-21 AT1G11360 127 / 9e-38 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Lus10017207 [exp] 51 / 8e-08 AT3G53990 217 / 2e-73 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10022602 [exp] 50 / 1e-07 AT3G53990 225 / 2e-76 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10021104 [exp] 50 / 2e-07 AT3G53990 215 / 2e-72 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10016900 [exp] 50 / 1e-06 AT3G17020 229 / 1e-72 Adenine nucleotide alpha hydrolases-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G150200 [exp] 221 / 8e-72 AT1G11360 209 / 1e-67 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Potri.011G039800 [exp] 211 / 4e-68 AT1G11360 269 / 3e-91 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Potri.019G119400 [exp] 211 / 1e-67 AT1G11360 164 / 2e-49 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Potri.011G125500 [exp] 192 / 2e-60 AT5G54430 237 / 3e-78 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.001G409100 [exp] 180 / 6e-56 AT5G54430 226 / 2e-74 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.013G009800 [exp] 58 / 3e-10 AT3G62550 172 / 2e-55 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.006G092700 [exp] 53 / 2e-08 AT3G53990 207 / 1e-69 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.014G122000 [exp] 50 / 2e-07 AT3G62550 195 / 1e-64 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.005G015200 [exp] 47 / 3e-06 AT3G62550 156 / 4e-49 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.002G196700 [exp] 43 / 7e-05 AT3G62550 196 / 6e-65 Adenine nucleotide alpha hydrolases-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00582 [flax] [poplar] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Lus10033749 pacid=23143505 polypeptide=Lus10033749 locus=Lus10033749.g ID=Lus10033749.BGIv1.0 annot-version=v1.0 ATGACCTCCCCACAACAAAAGCATCCGGAATCCTACCTCCCAATCCCACCTTCCCTCGCTTCCCTCAGAACCCGCTCCACCCCCTCCCCGCGCAGAATCA GCTTCTCATCCTCTACTCCCACCGCCGCCGCCGACACCCCTACCTCCGCCGCACAACGCCGCATTGCGATCGCCGTCGATCTCAGCGACGAGAGCGCCCA CGCCGTCAATTGGGCCGTCCAGAACTACCTACGCCCTGGTGACGCCGTCATCCTCCTCCACGTCCGACCCACCTCTGTCCTCTACGGCGCCGATTGGGGA TCCATCAAAGTCCAAATCAACAACGGCCGCCATAGCGAGCAAGCCGCTGCCGACGATCTTGCGGACAGGCTGGAGCAGCAGCAGCTGGAGGATGACTATG ATAGCTTCACCACGACAAAGGTGTTGGGAGAGATATTGATGGTTGGTTTATACGACGTTCCTTTTGAGCAGGCAAACGCTGTGGCGCAACCTTTGGTGGA CGGAGGGATACCGTTCAAGATTCGGATAGTGAAGGACCACGACATGAAGGAGAGGCTATGTCTGGAAGTGGAGAGGCTAGGATTGAGCGCGGTGGTGATG GGGAGCCGAGGGTTTGGTGCAACGAGAAGGAGGAACGGTAAAGAGAGGTTGGGGAGTGTGAGCGATTATTGCGTTCATCACTGCATTTGTCCAGTGGTGG TGGTGAGGTATCCTGAGGAGGATCAGGATAATGAAGATGGAAGTTTGAAGGCTGGAGTGATTACTGCTGTTCCAGAGGAGCAGGAAGAGCTTCATGATGG CTCTGATGAACATAAAGATGCTTAA
AA sequence Show only first row Show all	>Lus10033749 pacid=23143505 polypeptide=Lus10033749 locus=Lus10033749.g ID=Lus10033749.BGIv1.0 annot-version=v1.0 MTSPQQKHPESYLPIPPSLASLRTRSTPSPRRISFSSSTPTAAADTPTSAAQRRIAIAVDLSDESAHAVNWAVQNYLRPGDAVILLHVRPTSVLYGADWG SIKVQINNGRHSEQAAADDLADRLEQQQLEDDYDSFTTTKVLGEILMVGLYDVPFEQANAVAQPLVDGGIPFKIRIVKDHDMKERLCLEVERLGLSAVVM GSRGFGATRRRNGKERLGSVSDYCVHHCICPVVVVRYPEEDQDNEDGSLKAGVITAVPEEQEELHDGSDEHKDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11360			Adenine nucleotide alpha hydro...		Lus10033749 [exp]	0	1
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10027570 [exp]	6.9	0.8820
AT2G25280			unknown protein		Lus10001950 [exp]	7.1	0.8923
AT3G58680		MBF1B, ATMBF1B	multiprotein bridging factor 1...		Lus10013686 [exp]	9.6	0.8840
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10008838 [exp]	13.5	0.8966
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10005924 [exp]	14.0	0.8802
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Lus10017282 [exp]	15.7	0.8830
AT4G24290			MAC/Perforin domain-containing...		Lus10012717 [exp]	16.1	0.8951
AT1G59650		CW14	Protein of unknown function (D...		Lus10010740 [exp]	17.0	0.8172
AT5G25280			serine-rich protein-related (....		Lus10039998 [exp]	21.4	0.8041
AT5G01970			unknown protein		Lus10031947 [exp]	21.6	0.8571

Compare expression of checked genes

Lus10033749 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.