Plant FIBer expression Database

Lus10033750 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G03240 192 / 5e-63 ATFH, FH frataxin homolog (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039728
[exp]
229 / 2e-77 AT4G03240 186 / 3e-60 frataxin homolog (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G150400
[exp]
223 / 8e-75 AT4G03240 188 / 5e-61 frataxin homolog (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01491 Frataxin_Cyay Frataxin-like domain
Representative CDS sequence
>Lus10033750 pacid=23143270 polypeptide=Lus10033750 locus=Lus10033750.g ID=Lus10033750.BGIv1.0 annot-version=v1.0
ATGGCTTCCAAGCTTCTCCCCCTCCGACGATTTCGCCGCAGTCTTCTTCGAACCCCTCATTCCCCTTCATCTTCCTCACTTCTCCGAGCTTCAAGACCCA
TCTGTTCTCGACTCAACTTCGAATCCGCTGCCGTCTCTAATTCTTCCAGAACTTTCTGTTCTTCTCGCTCTTCCACTATCGAAGGCCCCGCCGCAATCGA
CTACCGCTCAGTTCTGCAGGAAAATGAGTTTCATCAGCTTGCCGATTCGGCCATTCATGACCTTCAGGAGAAATTGGAGGAATATGGAGATACAGTTCAA
GTTGATGGCTTTGATATAGACTATGGGAATGAGGTTCTGACGCTGAAGCTTGGGGAGTTGGGGACCTATGTGTTGAACAAACAAACCCCTAACAGGCAAC
TTTGGCTCTCTTCCCCTGTTAGTGGCCCGTCAAGATTTGACTGGGACAGGGACGCTGAAGCTTGGATTTATCGACGCACCAAGTCAAACCTAATCAAAGT
TTTCGAAACCGAACTGAAGCAGCTGTGTGGACAACCCCTCAAGCTTACATAA
AA sequence
>Lus10033750 pacid=23143270 polypeptide=Lus10033750 locus=Lus10033750.g ID=Lus10033750.BGIv1.0 annot-version=v1.0
MASKLLPLRRFRRSLLRTPHSPSSSSLLRASRPICSRLNFESAAVSNSSRTFCSSRSSTIEGPAAIDYRSVLQENEFHQLADSAIHDLQEKLEEYGDTVQ
VDGFDIDYGNEVLTLKLGELGTYVLNKQTPNRQLWLSSPVSGPSRFDWDRDAEAWIYRRTKSNLIKVFETELKQLCGQPLKLT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G03240 ATFH, FH frataxin homolog (.1) Lus10033750
[exp]
0 1
AT4G27070 TSB2 tryptophan synthase beta-subun... Lus10043059
[exp]
3.2 0.9269
AT4G27070 TSB2 tryptophan synthase beta-subun... Lus10011154
[exp]
6.5 0.9190
AT5G47030 ATPase, F1 complex, delta/epsi... Lus10040130
[exp]
9.2 0.9104
AT5G43390 Uncharacterised conserved prot... Lus10021875
[exp]
9.8 0.9022
AT1G80040 unknown protein Lus10014293
[exp]
11.8 0.8776
AT2G27260 Late embryogenesis abundant (L... Lus10034173
[exp]
14.1 0.8995
AT5G52840 NADH-ubiquinone oxidoreductase... Lus10027539
[exp]
14.5 0.9029
AT4G29040 RPT2A regulatory particle AAA-ATPase... Lus10001313
[exp]
15.3 0.9069
AT5G51830 pfkB-like carbohydrate kinase ... Lus10027401
[exp]
15.4 0.9124
AT4G11260 RPR1, ETA3, EDM... ENHANCER OF TIR1-1 AUXIN RESIS... Lus10032305
[exp]
16.1 0.8630

Lus10033750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.