Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27310 105 / 4e-28 CO B-box type zinc finger family protein (.1) AT5G54470 100 / 4e-26 CO B-box type zinc finger family protein (.1) AT3G21890 58 / 4e-11 CO B-box type zinc finger family protein (.1) AT3G21150 57 / 5e-10 CO EIP6, BBX32 EMF1-Interacting Protein 1, B-box domain protein 32, B-box 32 (.1) AT4G15248 55 / 5e-10 CO B-box type zinc finger family protein (.1) AT3G02380 54 / 8e-09 CO ATCOL2, COL2 CONSTANS-like 2 (.1) AT1G68190 53 / 3e-08 CO B-box zinc finger family protein (.1) AT4G15250 53 / 3e-08 CO COL11 B-box type zinc finger protein with CCT domain (.1) AT5G15850 52 / 5e-08 CO COL1, ATCOL1 CONSTANS-like 1 (.1) AT5G48250 52 / 5e-08 CO COL10 B-box type zinc finger protein with CCT domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031593 [exp] 227 / 5e-76 AT4G27310 119 / 2e-33 B-box type zinc finger family protein (.1) Lus10018513 [exp] 138 / 2e-40 AT4G27310 117 / 3e-32 B-box type zinc finger family protein (.1) Lus10039727 [exp] 136 / 6e-40 AT5G54470 118 / 1e-32 B-box type zinc finger family protein (.1) Lus10015097 [exp] 73 / 8e-17 AT4G15248 94 / 5e-26 B-box type zinc finger family protein (.1) Lus10031583 [exp] 72 / 2e-16 AT3G21890 96 / 1e-26 B-box type zinc finger family protein (.1) Lus10039694 [exp] 66 / 5e-14 AT4G15248 108 / 1e-31 B-box type zinc finger family protein (.1) Lus10027151 [exp] 66 / 7e-14 AT4G15248 109 / 7e-32 B-box type zinc finger family protein (.1) Lus10033380 [exp] 64 / 2e-12 AT3G21150 112 / 3e-30 EMF1-Interacting Protein 1, B-box domain protein 32, B-box 32 (.1) Lus10034830 [exp] 62 / 8e-12 AT3G21150 112 / 3e-30 EMF1-Interacting Protein 1, B-box domain protein 32, B-box 32 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G150500 [exp] 122 / 1e-34 AT4G27310 114 / 1e-31 B-box type zinc finger family protein (.1) Potri.004G026900 [exp] 109 / 2e-30 AT4G27310 109 / 2e-30 B-box type zinc finger family protein (.1) Potri.011G039700 [exp] 108 / 1e-29 AT4G27310 105 / 3e-28 B-box type zinc finger family protein (.1) Potri.001G414700 [exp] 105 / 1e-27 AT5G54470 126 / 2e-35 B-box type zinc finger family protein (.1) Potri.011G125400 [exp] 105 / 3e-27 AT5G54470 120 / 1e-32 B-box type zinc finger family protein (.1) Potri.004G027100 [exp] 94 / 8e-25 AT5G54470 97 / 4e-26 B-box type zinc finger family protein (.1) Potri.004G027000 [exp] 83 / 5e-21 AT4G27310 91 / 5e-24 B-box type zinc finger family protein (.1) Potri.010G251800 [exp] 71 / 1e-14 AT3G21150 130 / 5e-37 EMF1-Interacting Protein 1, B-box domain protein 32, B-box 32 (.1) Potri.007G121100 [exp] 66 / 5e-14 AT4G15248 108 / 2e-31 B-box type zinc finger family protein (.1) Potri.008G007000 [exp] 67 / 1e-13 AT3G21150 128 / 3e-36 EMF1-Interacting Protein 1, B-box domain protein 32, B-box 32 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00643 [flax] [poplar] zf-B_box B-box zinc finger
Representative CDS sequence Show only first row Show all	>Lus10033751 pacid=23143350 polypeptide=Lus10033751 locus=Lus10033751.g ID=Lus10033751.BGIv1.0 annot-version=v1.0 ATGAAGAATTGCGAGCTCTGCAAGTCCCCGGCGAGGACCTACTGCGAATCCGACGACGCTAGCCTCTGCTGGTCATGCGACGCCAATGTCCACGGAGCTA ATTTCCTCGTCGCTCGTCACTCCCGCACTCTGCTCTGCCAATTGTGCCAGTCCGTAACTCCCTGGCAGGCCGCGGGTGCCAAGCTCGGAAACGCCTTCTC GTTCTGTCTACGCTGCGCTAATGGAGACACTACTAATCGAGATGAAAGCGGAAGTGAGGAGGAAGAGGATGAAGATGATGAGATCGAGGAAGATCAGGAG GAAGAGGAAGGAGATAATCAGGTTGTTCCATGGTCGTCATCCTCCGCCTCCACGCCGCCGCCTCCCCCTCCGGCTAGCGACAGCGAGGACTGTGAAGATT TCGTCGAGTCTGATCAGAGGAGTCTAGATCTTAGATTCTTTCCTCAGGACGATATCAGCCGCCGATCTTCTCGTTCTAGACAGTCGGCGATCAGCTGTGA CGATGATGATGATTCGTCGAGGCCGTTGAAAATCCGGAGGAGGGAAGGCGTCGATGAGCATGTTACGTCGAGGGAGAGTGGCCGTCCGATTTGA
AA sequence Show only first row Show all	>Lus10033751 pacid=23143350 polypeptide=Lus10033751 locus=Lus10033751.g ID=Lus10033751.BGIv1.0 annot-version=v1.0 MKNCELCKSPARTYCESDDASLCWSCDANVHGANFLVARHSRTLLCQLCQSVTPWQAAGAKLGNAFSFCLRCANGDTTNRDESGSEEEEDEDDEIEEDQE EEEGDNQVVPWSSSSASTPPPPPPASDSEDCEDFVESDQRSLDLRFFPQDDISRRSSRSRQSAISCDDDDDSSRPLKIRRREGVDEHVTSRESGRPI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27310	CO		B-box type zinc finger family ...		Lus10033751 [exp]	0	1
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Lus10026238 [exp]	5.8	0.8893
AT1G06040	CO	BBX24, STO	SALT TOLERANCE, B-box domain p...		Lus10027041 [exp]	9.5	0.8551
AT4G02425			unknown protein		Lus10030370 [exp]	9.5	0.8232
AT4G32480			Protein of unknown function (D...		Lus10006177 [exp]	11.6	0.8488
AT4G15248	CO		B-box type zinc finger family ...		Lus10027151 [exp]	19.6	0.8335
AT5G13770			Pentatricopeptide repeat (PPR-...		Lus10035089 [exp]	20.2	0.8393
AT1G06040	CO	BBX24, STO	SALT TOLERANCE, B-box domain p...		Lus10025579 [exp]	21.2	0.8461
AT3G18750		ZIK5, WNK6, ATW...	ARABIDOPSIS THALIANA WITH NO K...		Lus10030229 [exp]	22.0	0.7956
AT4G27310	CO		B-box type zinc finger family ...		Lus10031593 [exp]	24.0	0.8020
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Lus10021273 [exp]	26.3	0.8038

Compare expression of checked genes

Lus10033751 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.