Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03230 498 / 3e-169 S-locus lectin protein kinase family protein (.1) AT4G21390 404 / 2e-134 B120 S-locus lectin protein kinase family protein (.1) AT1G11330 401 / 2e-133 S-locus lectin protein kinase family protein (.1.2) AT4G27300 396 / 9e-132 S-locus lectin protein kinase family protein (.1) AT4G21380 393 / 2e-130 ARK3 receptor kinase 3 (.1) AT1G65800 392 / 8e-130 ARK2 receptor kinase 2 (.1) AT4G23180 386 / 9e-130 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT1G65790 390 / 3e-129 ARK1 receptor kinase 1 (.1) AT4G27290 388 / 4e-129 S-locus lectin protein kinase family protein (.1) AT4G23230 379 / 9e-129 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031591 [exp] 677 / 0 AT4G03230 853 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039725 [exp] 531 / 0 AT4G03230 445 / 5e-144 S-locus lectin protein kinase family protein (.1) Lus10018512 [exp] 525 / 1e-179 AT4G03230 823 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018408 [exp] 415 / 5e-138 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 412 / 6e-138 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10024064 [exp] 404 / 1e-134 AT1G11340 735 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10006742 [exp] 410 / 5e-134 AT4G21390 800 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10020083 [exp] 388 / 6e-134 AT4G21390 427 / 6e-143 S-locus lectin protein kinase family protein (.1) Lus10006745 [exp] 396 / 3e-133 AT1G11340 774 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G120000 [exp] 502 / 3e-170 AT4G03230 967 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G119700 [exp] 501 / 3e-170 AT4G03230 1025 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G150800 [exp] 499 / 1e-169 AT4G03230 1206 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G119900 [exp] 497 / 2e-168 AT4G03230 974 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G119600 [exp] 495 / 9e-168 AT4G03230 983 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125050 [exp] 425 / 8e-143 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G027501 [exp] 409 / 6e-139 AT4G23180 553 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.001G413800 [exp] 414 / 9e-139 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.005G014802 [exp] 402 / 3e-138 AT1G11330 454 / 5e-152 S-locus lectin protein kinase family protein (.1.2) Potri.011G037300 [exp] 412 / 1e-137 AT4G21390 922 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10033752 pacid=23143444 polypeptide=Lus10033752 locus=Lus10033752.g ID=Lus10033752.BGIv1.0 annot-version=v1.0 ATGAATGCATGTTCCTCTCAACATCCTGACAGTGAAAAGAGAGTGAAAGAGTTCATAAACTCTGGAAATGAGTTTGGTGAAGATGATAAGAGGGACATCA ATGTCCCTTTCTTTGATTTGGACTGCATTTTAGCTGCCACCGACTTCTTCTCCATTGACAACAAGCTCGGACAGGGTGGTTTCGGCCCCGTTTACAAGGG CAAGTTTCCAGGAGGCCAGGAGATTGCAGTGAAGAGGCTGTCCAGCGCCTCGGCGCAAGGGTTAGAAGAGTTCAAAAACGAGGTCGTTCTGATTGCGAAG CTACAACACAAGAATCTCGTCAGGCTGTTGGGATACTGTGTTGAAGGGAATGAGATGATGTTGCTCTACGAGTACATGCCTAACAAGAGCCTCGACTTCT TCATCTTTGATGGAAGTCGGTGTGTGTTACTGGATTGGAAGATGAGGTTCAACATCATAATGGGGATTGCTCGAGGACTGCTTTACCTCCATCATGATTC GAGGCTGACAATCATCCATAGAGACTTGAAAACCAGCAACATCCTTCTCGACGAGCAAATGGACCCTCGAATTTCGGACTTTGGCATGGCGAGGATAATG GGAGGGCAGGAAACAGAGGCCAACACTGTCAAAGTAGTTGGAACTTATGGCTACATGTCTCCGGAGTACGCGCTAGACGGGAACTTCTCAATAAAATCCG ACGTATTCAGCTTCGGAGTGGTCCTACTCGAGATCATCAGCGGGAAGAGGAACACCGGATTCTACAAGTCGAACAAAGTGGTGTCCCTTCTAGGGCATGT ATGGGAGTACTGGAGAGAAGAGAAGGCGATGGAAGTGATGGATCAATCGTTGTCCGAAACATGTGTGGCGAATGAGTTCCTGAGGTGTGTAAACGTCGCG CTGCTGTGCGTTCAGGAAGATCCTAACGATCGACCGACAATGGAGAATGTTTTGTTCATGTTAGGCAGTGAAGCAGCTAGCCTTGGCCGTCCGAAAGAGC CTGCATTCACTATCAGGCGGGAAATTTCGAGTTCTACTTCGAGCAATATAGTGGCTATGGACACTACTATGGTGGAAGCAAGATGA
AA sequence Show only first row Show all	>Lus10033752 pacid=23143444 polypeptide=Lus10033752 locus=Lus10033752.g ID=Lus10033752.BGIv1.0 annot-version=v1.0 MNACSSQHPDSEKRVKEFINSGNEFGEDDKRDINVPFFDLDCILAATDFFSIDNKLGQGGFGPVYKGKFPGGQEIAVKRLSSASAQGLEEFKNEVVLIAK LQHKNLVRLLGYCVEGNEMMLLYEYMPNKSLDFFIFDGSRCVLLDWKMRFNIIMGIARGLLYLHHDSRLTIIHRDLKTSNILLDEQMDPRISDFGMARIM GGQETEANTVKVVGTYGYMSPEYALDGNFSIKSDVFSFGVVLLEIISGKRNTGFYKSNKVVSLLGHVWEYWREEKAMEVMDQSLSETCVANEFLRCVNVA LLCVQEDPNDRPTMENVLFMLGSEAASLGRPKEPAFTIRREISSSTSSNIVAMDTTMVEAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03230			S-locus lectin protein kinase ...		Lus10033752 [exp]	0	1
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10028513 [exp]	2.2	0.8604
AT4G30200		VEL1, VIL2	VIN3-Like 2, vernalization5/VI...		Lus10040339 [exp]	2.4	0.8661
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10028942 [exp]	2.6	0.8706
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10022313 [exp]	3.2	0.7979
AT3G42150			unknown protein		Lus10031451 [exp]	4.2	0.8459
AT2G38940		PHT1;4, ATPT2	ARABIDOPSIS THALIANA PHOSPHATE...		Lus10033866 [exp]	5.3	0.8658
AT2G37880			Protein of unknown function, D...		Lus10021495 [exp]	8.2	0.8671
					Lus10009804 [exp]	8.9	0.7725
AT2G02120		PDF2.1, LCR70	LOW-MOLECULAR-WEIGHT CYSTEINE-...		Lus10039622 [exp]	10.0	0.7655
AT1G13570			F-box/RNI-like superfamily pro...		Lus10016472 [exp]	13.8	0.6814

Compare expression of checked genes

Lus10033752 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.