Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03495 267 / 3e-84 HXXXD-type acyl-transferase family protein (.1) AT1G03940 265 / 1e-83 HXXXD-type acyl-transferase family protein (.1) AT3G29670 209 / 2e-62 PMAT2 phenolic glucoside malonyltransferase 2, HXXXD-type acyl-transferase family protein (.1) AT3G29635 209 / 3e-62 HXXXD-type acyl-transferase family protein (.1) AT3G29590 182 / 3e-52 AT5MAT HXXXD-type acyl-transferase family protein (.1) AT5G39090 175 / 2e-49 HXXXD-type acyl-transferase family protein (.1) AT5G61160 173 / 9e-49 AACT1 anthocyanin 5-aromatic acyltransferase 1 (.1) AT5G39050 159 / 2e-43 PMAT1 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) AT5G39080 158 / 4e-43 HXXXD-type acyl-transferase family protein (.1) AT3G29680 155 / 6e-42 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031587 [exp] 800 / 0 AT1G03495 305 / 7e-99 HXXXD-type acyl-transferase family protein (.1) Lus10018507 [exp] 499 / 3e-173 AT1G03495 286 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Lus10020714 [exp] 463 / 1e-160 AT1G03495 337 / 1e-111 HXXXD-type acyl-transferase family protein (.1) Lus10039746 [exp] 249 / 2e-77 AT1G03940 304 / 8e-99 HXXXD-type acyl-transferase family protein (.1) Lus10039745 [exp] 249 / 6e-77 AT1G03940 297 / 1e-95 HXXXD-type acyl-transferase family protein (.1) Lus10033599 [exp] 221 / 2e-66 AT3G29635 307 / 1e-99 HXXXD-type acyl-transferase family protein (.1) Lus10039721 [exp] 197 / 2e-60 AT1G03495 89 / 1e-20 HXXXD-type acyl-transferase family protein (.1) Lus10041658 [exp] 197 / 1e-57 AT3G29590 298 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10005362 [exp] 184 / 1e-52 AT3G29635 292 / 4e-94 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G118000 [exp] 399 / 1e-135 AT1G03940 328 / 6e-108 HXXXD-type acyl-transferase family protein (.1) Potri.019G118101 [exp] 399 / 2e-135 AT1G03940 339 / 2e-112 HXXXD-type acyl-transferase family protein (.1) Potri.009G063500 [exp] 295 / 5e-95 AT1G03940 280 / 4e-89 HXXXD-type acyl-transferase family protein (.1) Potri.004G103200 [exp] 222 / 5e-67 AT5G39050 374 / 1e-125 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103300 [exp] 218 / 2e-65 AT5G39050 352 / 3e-117 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G109800 [exp] 212 / 4e-63 AT5G39050 368 / 2e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103100 [exp] 208 / 1e-61 AT5G39050 366 / 1e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110400 [exp] 207 / 3e-61 AT5G39050 363 / 2e-121 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110640 [exp] 206 / 1e-60 AT5G39050 365 / 2e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G109300 [exp] 205 / 2e-60 AT5G39050 365 / 3e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10033754 pacid=23143486 polypeptide=Lus10033754 locus=Lus10033754.g ID=Lus10033754.BGIv1.0 annot-version=v1.0 ATGGATGATAATCTTCAATCCCTGAAACTCCTCCACCATTTCCAAGTCTCGCCGCCGCCGCCGTCCTCCGCCGTCAACCTCCCCCTCACTTTCCTCGACT ACCCATGGCTACTCTGTCGTCCGATGCAGCGCCTCTTCTTCTACGACTTCCCTCACCCAACCCATCACTTCACCGCAACCATCCTCCCTGAGCTCAAACT CTCCCTCTCTGCCGCCCTCCGCCACTTCTTCCCTCTCGCCGGCCGCCTCGTTTCCCCGCCGCCCCCTCACCTCCCCCACCTCCTCTTCGATCCGTCCAAC TCCTCCGTCCCCCTAACAATCGCCGAGTCAACCGCCGATTTAGACCAAATCGTCGCCTCTGCCGGCGCCGGAGCCAGAGACGCTAAGGAGCTACGCCCTT TCGTCCCGAAACTTCCCGACTCCGTTGAGAATCCCGACGGTACGAAGTTGGTCCCGCTGTTGGCTCTCCAAATCACTATCTTCCCAGGGAAAGGTTTATG CGTCGGCGGAGAATTCGCACACGTCGTCTGCGACGGGATGGGTTTTCATCACTTCGTCAAATTCTGGGCTGCTCTGTTCAGATCTGGTGATAACGATTGT AATAGTAATATTACTGTCCCGTTGCCGTCTCACGATCGGGAATTAATCCGGAGAGCTTACCCAGATCTGGAATCGGTTCTGTTGAGCCAGTGGTTTGAAT TTCGGTCGTCGTGGGATTTCGATTCGGGTCCGGTTAAGTTCAAGGACCTGACCGATAAAGTCCGATCAACTTTCCTGATCACGAAGGCGAAGATCGAGAG GATGAAGATCTGGGTCAGGAAAACCAATCGGTCGCCGTTTCATTTATCCTCCTTCGTTTTGACCTCTGCTTTTATCTGGGTCACTCTGATTAAATCCGAG GGGAGACAAAACGACGACGAGCTGTACCACATGAGCTTCGTCGCGGATTGCCGCCGCCGTCTGGCGATCGGGCTACAGGAGACATACTTCGGGAACTGCT TAGGGATTTACTACGTCTCGATCAGGAGAAGCGATGCGGTTGCTGGTGAAGGAGTGGCGACAGCTGCGGAGGCGATTGGAAGGAAAGTGGAAGAGCTGGA GAGCTCCGGCAGCGGCGACGGAGGGAGGACGGGGTTGTTGGGAGGGGTGGAGAGGTGGATACCGGGGTGGAAGGAGTTATCGGAAGGAGGGAGGCTGATG GCGACTGCTGGATCGCCGAAGCTGAAGGCGTACGACACCGATTTCGGGTGGGGGAAGCCAAGGAAGAGCGAGGTGGTTCAGGTGGATAGCTCCGGCGCGG TGTCGCTGTGCGAGAGTGGCGATGGAAGCGGCGGGATTGAGGTCGGATTGGCTCTGCCAAGCCGGAAGATGGACCTTTTCCGGCGGTTGTTTGACAATTT CCTCAGTCGAATTTGA
AA sequence Show only first row Show all	>Lus10033754 pacid=23143486 polypeptide=Lus10033754 locus=Lus10033754.g ID=Lus10033754.BGIv1.0 annot-version=v1.0 MDDNLQSLKLLHHFQVSPPPPSSAVNLPLTFLDYPWLLCRPMQRLFFYDFPHPTHHFTATILPELKLSLSAALRHFFPLAGRLVSPPPPHLPHLLFDPSN SSVPLTIAESTADLDQIVASAGAGARDAKELRPFVPKLPDSVENPDGTKLVPLLALQITIFPGKGLCVGGEFAHVVCDGMGFHHFVKFWAALFRSGDNDC NSNITVPLPSHDRELIRRAYPDLESVLLSQWFEFRSSWDFDSGPVKFKDLTDKVRSTFLITKAKIERMKIWVRKTNRSPFHLSSFVLTSAFIWVTLIKSE GRQNDDELYHMSFVADCRRRLAIGLQETYFGNCLGIYYVSIRRSDAVAGEGVATAAEAIGRKVEELESSGSGDGGRTGLLGGVERWIPGWKELSEGGRLM ATAGSPKLKAYDTDFGWGKPRKSEVVQVDSSGAVSLCESGDGSGGIEVGLALPSRKMDLFRRLFDNFLSRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10033754 [exp]	0	1
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10025904 [exp]	1.0	0.9342
AT2G21970		SEP2	stress enhanced protein 2 (.1)		Lus10036629 [exp]	2.4	0.9123
AT3G57540			Remorin family protein (.1)		Lus10026302 [exp]	3.0	0.8983
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Lus10019017 [exp]	3.2	0.8811
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10020353 [exp]	4.5	0.8920
AT5G23230		NIC2	nicotinamidase 2 (.1)		Lus10040988 [exp]	4.6	0.8820
AT1G07080			Thioredoxin superfamily protei...		Lus10042270 [exp]	4.9	0.8818
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Lus10027449 [exp]	6.0	0.8794
AT2G31820			Ankyrin repeat family protein ...		Lus10027074 [exp]	6.2	0.8688
AT4G29110			unknown protein		Lus10014153 [exp]	6.5	0.8825

Compare expression of checked genes

Lus10033754 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.