Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03210 340 / 6e-117 XTH9, EXGT-A6, XTR16 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) AT4G14130 240 / 1e-77 XTR7, XTH15 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) AT5G13870 239 / 2e-77 EXGT-A4, XTH5, XTR12 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) AT5G65730 239 / 4e-77 XTH6, XTR10 xyloglucan endotransglucosylase/hydrolase 6 (.1) AT3G23730 238 / 8e-77 XTH16 xyloglucan endotransglucosylase/hydrolase 16 (.1) AT4G37800 236 / 5e-76 XTH7, XTR15 xyloglucan endotransglucosylase/hydrolase 7 (.1) AT4G28850 234 / 4e-75 ATXTH26, XTH26, XTR18 xyloglucan endotransglucosylase/hydrolase 26 (.1) AT4G25820 228 / 4e-73 ATXTH14, XTR9, XTH14 xyloglucan endotransglycosylase 9, xyloglucan endotransglucosylase/hydrolase 14 (.1) AT5G57560 226 / 2e-72 XTH22, TCH4 xyloglucan endotransglucosylase/hydrolase 22, Touch 4, Xyloglucan endotransglucosylase/hydrolase family protein (.1) AT2G06850 225 / 1e-71 XTH4, EXT, EXGT-A1 endoxyloglucan transferase A1, xyloglucan endotransglucosylase/hydrolase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031586 [exp] 486 / 3e-174 AT4G03210 446 / 9e-160 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Lus10018503 [exp] 481 / 5e-172 AT4G03210 439 / 9e-157 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Lus10039715 [exp] 475 / 8e-170 AT4G03210 441 / 1e-157 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Lus10010938 [exp] 239 / 3e-77 AT4G14130 386 / 3e-136 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Lus10011052 [exp] 236 / 3e-75 AT5G13870 507 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10003022 [exp] 234 / 4e-75 AT5G13870 506 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10020773 [exp] 233 / 6e-75 AT3G23730 394 / 4e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10020772 [exp] 233 / 7e-75 AT3G23730 393 / 7e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10035654 [exp] 232 / 3e-74 AT2G14620 437 / 6e-156 xyloglucan endotransglucosylase/hydrolase 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G152400 [exp] 448 / 2e-159 AT4G03210 442 / 2e-158 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Potri.019G125000 [exp] 395 / 1e-138 AT4G03210 450 / 3e-161 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Potri.007G008500 [exp] 251 / 8e-82 AT5G65730 472 / 6e-170 xyloglucan endotransglucosylase/hydrolase 6 (.1) Potri.018G095100 [exp] 247 / 2e-80 AT4G25810 420 / 1e-149 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.018G095200 [exp] 244 / 3e-79 AT4G25810 414 / 3e-147 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.006G160700 [exp] 241 / 7e-78 AT4G28850 390 / 9e-138 xyloglucan endotransglucosylase/hydrolase 26 (.1) Potri.011G077320 [exp] 241 / 9e-78 AT3G23730 386 / 7e-136 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.002G060500 [exp] 239 / 4e-77 AT4G14130 424 / 3e-151 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.006G170100 [exp] 236 / 6e-76 AT4G25810 380 / 1e-133 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.006G169900 [exp] 236 / 6e-76 AT4G25810 380 / 1e-133 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10033755 pacid=23143466 polypeptide=Lus10033755 locus=Lus10033755.g ID=Lus10033755.BGIv1.0 annot-version=v1.0 ATGGCGGTCTCAATCTTCACAATGTCTCTCCTTTTTGAAGCTTTCATGGCATTTGCAATGATGGGTATTCTTTCCTCTGCCAAATTCGACGAGCTGGTCC AACCAAGCTGGGCTACTGACCACTTGATCTACGAAGGGGATCAGCTCAAGCTCAAGCTGGACAACTATTCTGGATCTGGGTTTCAGTCCAAGAGCAAGTA CATGTTTGGCAAGGTCAACATTCAGATTAAGCTTGTGGAAGGGGACTCAGCTGGAACTGTCACTGCGTTCTACTTGTGGCTAACATGGATGCACTTAGGC CACATTCTTCGAGCCAGAATTGGCCTGGCATTGGACTCAATTCCGGATGCCGGGCGGATACATCGCCAAATCCCAGGATTTGGCATTGAATCCGAATTCC GACGGAATTCGGAGTTTAAAAAGTACGGATTCTTGATGTCCATTCATGGGATGTCATCGGAAGGTCCGAGTCACAACGAATTTGATTTCGAGTTCCTGGG AAACACCACAGGGGAGCCTTATGTAGTGCAGACGAATGTGTATGTCAATGGTGTTGGCAATAGGGAGCAAAGGTTGAACCTTTGGTTTGATCCCACCATG GATTTCCACAACTACTCCATCTTTTGGAACCCTAGCCAGGTTATATTCCTAGTGGATGATACACCAATAAGGCAGCACACAAACCTGGAGAACAAAGGGA TACCATTCCCCAAAGACCAGCCGATGGGAGTCTACAGCTCGATATGGAATGCAGACGACTGGGCGACCCAAGGAGGTCGAATCAAGACCGATTGGACCCA TGCTCCGTTCATCGCATCCTACAGGGGTTTCGAAATCGATGCCTGTGAGATCCCTGCATCATCATCAGGGGTTTCAGCGGTGGATTTGGCCAAGAACTGC ACCAGCAATGCTGAGAAGAAATACTGGTGGGATGAACCAATCTTGTCTGAGCTGAACTTGCACCAGAGCCATCAGCTGCTTTGGGTTAAGGCAAACCACA TGATCTATGACTACTGCAGTGACAATTCTAGGTTCCCTGTGACACCTGAAGAGTGCCAGCATCACCATCATTAG
AA sequence Show only first row Show all	>Lus10033755 pacid=23143466 polypeptide=Lus10033755 locus=Lus10033755.g ID=Lus10033755.BGIv1.0 annot-version=v1.0 MAVSIFTMSLLFEAFMAFAMMGILSSAKFDELVQPSWATDHLIYEGDQLKLKLDNYSGSGFQSKSKYMFGKVNIQIKLVEGDSAGTVTAFYLWLTWMHLG HILRARIGLALDSIPDAGRIHRQIPGFGIESEFRRNSEFKKYGFLMSIHGMSSEGPSHNEFDFEFLGNTTGEPYVVQTNVYVNGVGNREQRLNLWFDPTM DFHNYSIFWNPSQVIFLVDDTPIRQHTNLENKGIPFPKDQPMGVYSSIWNADDWATQGGRIKTDWTHAPFIASYRGFEIDACEIPASSSGVSAVDLAKNC TSNAEKKYWWDEPILSELNLHQSHQLLWVKANHMIYDYCSDNSRFPVTPEECQHHHH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03210		XTH9, EXGT-A6, ...	xyloglucan endotransglucosylas...		Lus10033755 [exp]	0	1
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10041655 [exp]	1.0	0.9713
AT3G14620		CYP72A8	"cytochrome P450, family 72, s...		Lus10026681 [exp]	2.4	0.9305
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10004633 [exp]	5.0	0.9185
AT4G39620		ATPPR5, EMB2453	EMBRYO DEFECTIVE 2453, A. THAL...		Lus10036633 [exp]	5.1	0.9331
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10033717 [exp]	6.0	0.9169
AT3G54820		PIP2D, PIP2;5	PLASMA MEMBRANE INTRINSIC PROT...		Lus10023515 [exp]	7.2	0.9289
AT5G59510		RTFL5, DVL18	DEVIL 18, ROTUNDIFOLIA like 5 ...		Lus10001569 [exp]	9.7	0.8797
AT3G02110		SCPL25	serine carboxypeptidase-like 2...		Lus10032980 [exp]	10.9	0.8815
					Lus10021792 [exp]	12.0	0.8915
AT1G66520		PDE194	pigment defective 194, formylt...		Lus10000450 [exp]	14.8	0.8733

Compare expression of checked genes

Lus10033755 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.