Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22960 599 / 0 PKP-ALPHA, PKP1 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) AT5G52920 322 / 2e-102 PKP-BETA1, PKP2, PKP1 PLASTIDIAL PYRUVATE KINASE 2, PLASTIDIAL PYRUVATE KINASE 1, plastidic pyruvate kinase beta subunit 1 (.1) AT1G32440 313 / 3e-99 PKP3 plastidial pyruvate kinase 3 (.1) AT3G25960 221 / 6e-65 Pyruvate kinase family protein (.1) AT3G55650 218 / 5e-64 Pyruvate kinase family protein (.1) AT5G63680 216 / 3e-63 Pyruvate kinase family protein (.1) AT5G08570 213 / 8e-62 Pyruvate kinase family protein (.1) AT3G04050 212 / 1e-61 Pyruvate kinase family protein (.1) AT4G26390 211 / 3e-61 Pyruvate kinase family protein (.1) AT5G56350 208 / 3e-60 Pyruvate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012446 [exp] 1071 / 0 AT3G22960 616 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10039396 [exp] 593 / 0 AT3G22960 934 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10012445 [exp] 590 / 0 AT3G22960 479 / 7e-163 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10006633 [exp] 590 / 0 AT3G22960 920 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10033757 [exp] 511 / 2e-177 AT3G22960 429 / 5e-145 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10000672 [exp] 312 / 8e-99 AT1G32440 830 / 0.0 plastidial pyruvate kinase 3 (.1) Lus10011057 [exp] 313 / 2e-98 AT1G32440 827 / 0.0 plastidial pyruvate kinase 3 (.1) Lus10039316 [exp] 305 / 2e-96 AT5G52920 902 / 0.0 PLASTIDIAL PYRUVATE KINASE 2, PLASTIDIAL PYRUVATE KINASE 1, plastidic pyruvate kinase beta subunit 1 (.1) Lus10041003 [exp] 216 / 6e-63 AT5G08570 928 / 0.0 Pyruvate kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G289300 [exp] 816 / 0 AT3G22960 623 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.009G084700 [exp] 815 / 0 AT3G22960 620 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.010G080700 [exp] 606 / 0 AT3G22960 930 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.008G159700 [exp] 603 / 0 AT3G22960 945 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.012G034000 [exp] 319 / 2e-101 AT5G52920 970 / 0.0 PLASTIDIAL PYRUVATE KINASE 2, PLASTIDIAL PYRUVATE KINASE 1, plastidic pyruvate kinase beta subunit 1 (.1) Potri.001G145300 [exp] 308 / 2e-97 AT1G32440 846 / 0.0 plastidial pyruvate kinase 3 (.1) Potri.003G088700 [exp] 304 / 7e-96 AT1G32440 836 / 0.0 plastidial pyruvate kinase 3 (.1) Potri.010G254900 [exp] 218 / 8e-64 AT5G08570 927 / 0.0 Pyruvate kinase family protein (.1) Potri.013G060400 [exp] 218 / 9e-64 AT5G56350 835 / 0.0 Pyruvate kinase family protein (.1) Potri.019G032600 [exp] 216 / 4e-63 AT5G56350 816 / 0.0 Pyruvate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [flax] [poplar] PK_TIM PF00224 [flax] [poplar] PK Pyruvate kinase, barrel domain CL0151 [flax] [poplar] PF02887 [flax] [poplar] PK_C Pyruvate kinase, alpha/beta domain
Representative CDS sequence Show only first row Show all	>Lus10033756 pacid=23172806 polypeptide=Lus10033756 locus=Lus10033756.g ID=Lus10033756.BGIv1.0 annot-version=v1.0 ATGACGGTGTCTAGCGACTCAGTTCTCCTCAGATTCGGCGGCGACCAAGTCGTGAAGCAGCTGACTTTTTCGATGAAGAGCCGGTTCCTGGGAATCCCGG CCAGTTCATTTTCTTGTGTTGAAAGAAAGCGACAGGTGGAGGGTGGTAGGTTTAGGTCATCTGGAATTTGGGCGGTGGCGGAAGCGGCCAGAGTTAAGAA GGTGGCGAGTTTGACAATGGCAGTTGACACAGTGGCGGAGGTGGAGCTGAAGGGGAAAGGGTTTTCAGGGATGAGGAAGACGAAGCTTGTGTGCACAATT GGGCCGGCGTGCTGTTCGATGGACGAATTGGAGAGGTTGGCGGCTGGAGGGATGAACGTTGCGCGGCTCAACATGTGCCATAACAGCAGAGAATGGCACA GGGATGTGATTGCCAAGATCAAGAAGTTGAATGAAGAAAAGGGGTTTTGTGTTTCGGTGATGATCGATACTGAAGGGAGCCAGATTCATGTCGTCGACCA TGGAGCTCCTTCTTCTCTCAAAGCTGAGGAGGGATCAGTTTGGGTATTTACAACACAGAAGTTCGAAGGCTCTCGTCCATTTACCGTCAGAGCAAACTTT GAAGGTTTCTCTCAAGGAATACGATGCCTGGGTACTTACAATGCAATCTCTCCTCCTTCTTGCTGGATTATGGTTGGTGATGAACTTGTCATTGATGGTG GAATGGCAAGCTTTGTGGTTGTTGAGAAGATGGGAGATGATCTACGCTGCAAGTGTACTGATCCTGGACTGCTCTTGCCTAGGGCCAAAATGAGCTTCTG GAGAAATGGCAAGCTCTCCTACCATGGCCTGCCAACCCTTTCACAAAAGGACTGGGAAGACATTGATTTTGGAGTTTCTGAAGGTGTAGTTTTCATTGCG GTGTCATTTGTTAGCGATGCCGACTCTGTCAAGCAACTAAAGCACTATCTATCCACCAACTCATCCAAATCAGTAAAAGTGTTGGCTAAGGTAGAAACCC TGGAATCTCTGCAAAACTTGGAAGAAATTGTGGAGGCATCCGATGGAATCATGGTAGCTCGTGGAGACCTTGGGGTTGAAGTTCCAATAGAACAGATCCC AACAGTCCAAGAAAAGATAACTCGCATATGCAGGCAGCTGAACAAGCCAGTCATTATAGCTTCGCAACTTCTTGAATCGATGATCGAATATCCAACTCCA ACCCGAGCCGAGGTTGCCGATGTAACGGAAGTAGTGAGACAGTACGCAGATGCACTGATGTTATCTGGTGAATCGGCCATTGGTTCACACGGTCAAAAGG CAGTTTCAGTACTGAAGATGGTAAGCAGTCGAATGGAGTCATGGACTCGCGAGGAATGTAGAAGGGCTTCTGCCCTTGATCAAAATAAACAACTTGGAAT GTCGTTGGCCGATCGAATTGCAGAAGCTATATGCAACTCTGTTGTCGAAATGGCAAACAACCTTGGCGTGGATGCCATATTTGTGTACACAAAGCATGGG GAGATGGCATCACTGATATCCAGGAACCGGCCAAACCCTCCGATATTTGCTTTTACTAACGATGGAAGCGCCAGGATGAGCTTGAATTTGCAGTGGGGGG TTATACCAGTTCTTGTGGATAATTTATCAGAAGATATGGAAGCAAATATCTTGAGCACCACTCATCTAATGAAAACAAAGGGGATGGTAAAGCCAGGATG TTCTGTTCTTGTTGTGTCTGATATAACTGCTAATGCCTTCCAGTCCATCAAGATCATGACCATCTCTTGA
AA sequence Show only first row Show all	>Lus10033756 pacid=23172806 polypeptide=Lus10033756 locus=Lus10033756.g ID=Lus10033756.BGIv1.0 annot-version=v1.0 MTVSSDSVLLRFGGDQVVKQLTFSMKSRFLGIPASSFSCVERKRQVEGGRFRSSGIWAVAEAARVKKVASLTMAVDTVAEVELKGKGFSGMRKTKLVCTI GPACCSMDELERLAAGGMNVARLNMCHNSREWHRDVIAKIKKLNEEKGFCVSVMIDTEGSQIHVVDHGAPSSLKAEEGSVWVFTTQKFEGSRPFTVRANF EGFSQGIRCLGTYNAISPPSCWIMVGDELVIDGGMASFVVVEKMGDDLRCKCTDPGLLLPRAKMSFWRNGKLSYHGLPTLSQKDWEDIDFGVSEGVVFIA VSFVSDADSVKQLKHYLSTNSSKSVKVLAKVETLESLQNLEEIVEASDGIMVARGDLGVEVPIEQIPTVQEKITRICRQLNKPVIIASQLLESMIEYPTP TRAEVADVTEVVRQYADALMLSGESAIGSHGQKAVSVLKMVSSRMESWTREECRRASALDQNKQLGMSLADRIAEAICNSVVEMANNLGVDAIFVYTKHG EMASLISRNRPNPPIFAFTNDGSARMSLNLQWGVIPVLVDNLSEDMEANILSTTHLMKTKGMVKPGCSVLVVSDITANAFQSIKIMTIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Lus10033756 [exp]	0	1
AT2G33640			DHHC-type zinc finger family p...		Lus10016036 [exp]	2.8	0.9348
AT3G62390		TBL6	TRICHOME BIREFRINGENCE-LIKE 6 ...		Lus10002430 [exp]	8.4	0.9113
AT1G64480		CBL8	calcineurin B-like protein 8 (...		Lus10001816 [exp]	8.7	0.9167
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10002075 [exp]	9.3	0.9186
AT3G49950	GRAS		GRAS family transcription fact...		Lus10014852 [exp]	11.0	0.9155
AT5G48940			Leucine-rich repeat transmembr...		Lus10023677 [exp]	11.7	0.9120
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10002207 [exp]	15.1	0.9149
AT5G02740			Ribosomal protein S24e family ...		Lus10003991 [exp]	15.2	0.9155
AT5G13110		G6PD2	glucose-6-phosphate dehydrogen...		Lus10011340 [exp]	17.1	0.9001
AT4G30000			Dihydropterin pyrophosphokinas...		Lus10036922 [exp]	17.5	0.8961

Compare expression of checked genes

Lus10033756 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.