Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22960 428 / 7e-145 PKP-ALPHA, PKP1 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) AT5G52920 255 / 5e-78 PKP-BETA1, PKP2, PKP1 PLASTIDIAL PYRUVATE KINASE 2, PLASTIDIAL PYRUVATE KINASE 1, plastidic pyruvate kinase beta subunit 1 (.1) AT1G32440 244 / 6e-74 PKP3 plastidial pyruvate kinase 3 (.1) AT5G63680 196 / 2e-56 Pyruvate kinase family protein (.1) AT5G08570 191 / 8e-55 Pyruvate kinase family protein (.1) AT4G26390 191 / 1e-54 Pyruvate kinase family protein (.1) AT3G55650 188 / 2e-53 Pyruvate kinase family protein (.1) AT3G25960 187 / 2e-53 Pyruvate kinase family protein (.1) AT3G04050 186 / 1e-52 Pyruvate kinase family protein (.1) AT5G56350 185 / 2e-52 Pyruvate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012445 [exp] 821 / 0 AT3G22960 479 / 7e-163 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10012446 [exp] 525 / 0 AT3G22960 616 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10033756 [exp] 512 / 7e-178 AT3G22960 599 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10039396 [exp] 420 / 8e-142 AT3G22960 934 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10006633 [exp] 419 / 2e-141 AT3G22960 920 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10000672 [exp] 250 / 4e-76 AT1G32440 830 / 0.0 plastidial pyruvate kinase 3 (.1) Lus10011057 [exp] 249 / 2e-75 AT1G32440 827 / 0.0 plastidial pyruvate kinase 3 (.1) Lus10039316 [exp] 242 / 1e-73 AT5G52920 902 / 0.0 PLASTIDIAL PYRUVATE KINASE 2, PLASTIDIAL PYRUVATE KINASE 1, plastidic pyruvate kinase beta subunit 1 (.1) Lus10041003 [exp] 191 / 3e-54 AT5G08570 928 / 0.0 Pyruvate kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G084700 [exp] 573 / 0 AT3G22960 620 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.001G289300 [exp] 566 / 0 AT3G22960 623 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.008G159700 [exp] 428 / 5e-145 AT3G22960 945 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.010G080700 [exp] 428 / 6e-145 AT3G22960 930 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.003G088700 [exp] 254 / 7e-78 AT1G32440 836 / 0.0 plastidial pyruvate kinase 3 (.1) Potri.001G145300 [exp] 252 / 6e-77 AT1G32440 846 / 0.0 plastidial pyruvate kinase 3 (.1) Potri.012G034000 [exp] 242 / 3e-73 AT5G52920 970 / 0.0 PLASTIDIAL PYRUVATE KINASE 2, PLASTIDIAL PYRUVATE KINASE 1, plastidic pyruvate kinase beta subunit 1 (.1) Potri.010G254900 [exp] 197 / 9e-57 AT5G08570 927 / 0.0 Pyruvate kinase family protein (.1) Potri.001G001600 [exp] 190 / 3e-54 AT5G56350 913 / 0.0 Pyruvate kinase family protein (.1) Potri.008G002500 [exp] 187 / 7e-53 AT5G08570 933 / 0.0 Pyruvate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [flax] [poplar] PK_TIM PF00224 [flax] [poplar] PK Pyruvate kinase, barrel domain
Representative CDS sequence Show only first row Show all	>Lus10033757 pacid=23172745 polypeptide=Lus10033757 locus=Lus10033757.g ID=Lus10033757.BGIv1.0 annot-version=v1.0 ATGGCTGCAGCCATTCTTGCATGTCACCCTACTAGCTCACTTCTGGTGCACAGAGCAACCATCTTCTCTTCTTATCTTCCTACTCGCCATCTTCCTTCTC CACAAAGACATGGGGTAACACTAACAAGAGCAGCAAGAAGAGAAATGAGCATCCAAGGAATAAAGGTGAGAGATGAGGTGGCGATGTTGGGTTTTGATGT GGTGGCAGAAGCAGAGCTGAGAGAGAAAGGGTCCATGGGGATGCGGAAGACAAAGCTGGTATGCACAACTGGGCCTGCTAGCTGTTCAATGCATGATTTG GAGAGATTAGCATGGCAAGGGATGAACATTGCCAGGCTCAACATGTGCAACACCTCAAGGGAATGGCACATAGATACCATTAGGAAGATCAAGCGATTGA ATCAGGAAAATGGGTTCTGTATTTCCATCATGATTGATACTCAAGGTGGACAGATTCATGTTGTGGACCATGGATCCCCTTCCACTCTCAAAGCTGAGGT TCTGTGCGGCTGTTTACAGCCTTTCACTGTTCAAGCAAGCTATCAAGGGTTTTCACAAGGCATCATAGCTGGAGATGAAATTGTTATTGATGGTGGAATG GCAAGCTTTGAAGTGATTGAGAAGAAAGGGAATGATCTGCTTTGTAAGTGCACTGATTCTGGTTTGTTCCTACCTCGAGCCAAATTGAGATTCTGGAGAA ATGGGGAGCTTCTTGTCAGGAACTATGGCCTTCCTAGTTTATCACAAAAGGATTGGGGTGATATTGAGTTTGGGATTTCGGAAGGTGTTGACTTGATTGC CATGTCGTTTGTGAATGGAGCTGAATCTGTCAAGCATATGAAGAAGTACCTTTCCGAGAAATCGACAAGATCAGTAAGAGTGGTGGCTAAAGTTGAGACC TTGGAGTCACTTCAGCACTTGGAGGAAATAGTAGAGGCATCCGACGGGATCATGGTGGCACGGGGCGACTTGGGAGTCGAAGTCCCACTCGAGCAGATTC CGACACTCCAAAAAGAAATTACTAGTCTTTGTAGGAAGCTAAACAAGCCGGTGATCATAGCTTCTCAGCTCCTTCAATCCATGGTCGAATACCCAACTCC GACGCGTGCAGAGTGGGTGACGGATGTTTCCGAAGGAGTTAGACCGTATGCAGACGCTTTGATGCTATCTGGCGAGTCAGCCATCGGATCATACAGCCAC AAGGCTCTTTCAGTCTTGAGGACGGTCTGCAATCGAATGGAAACATTGAACCACCATGAGAACCGACATGTTTCCCTCGCGAGACATAAACTCGGAGGGT CATTGTACAACTGTGTAGCTGAGGAGATTGCAATTCTGCTATTACTATGGGTACGTGACATGGAAGCTGATGTTTCAAAGACAATTGAACTCCTCAGAGG AAGAGGAGTGATAAGAGAAGGAGATGCAATCTTGGTGGTTTCGGATTTAGCTGATAAGGGGTTGACAGCAACAACAGCAATCCAGGTGAAGATCATTGGT TAG
AA sequence Show only first row Show all	>Lus10033757 pacid=23172745 polypeptide=Lus10033757 locus=Lus10033757.g ID=Lus10033757.BGIv1.0 annot-version=v1.0 MAAAILACHPTSSLLVHRATIFSSYLPTRHLPSPQRHGVTLTRAARREMSIQGIKVRDEVAMLGFDVVAEAELREKGSMGMRKTKLVCTTGPASCSMHDL ERLAWQGMNIARLNMCNTSREWHIDTIRKIKRLNQENGFCISIMIDTQGGQIHVVDHGSPSTLKAEVLCGCLQPFTVQASYQGFSQGIIAGDEIVIDGGM ASFEVIEKKGNDLLCKCTDSGLFLPRAKLRFWRNGELLVRNYGLPSLSQKDWGDIEFGISEGVDLIAMSFVNGAESVKHMKKYLSEKSTRSVRVVAKVET LESLQHLEEIVEASDGIMVARGDLGVEVPLEQIPTLQKEITSLCRKLNKPVIIASQLLQSMVEYPTPTRAEWVTDVSEGVRPYADALMLSGESAIGSYSH KALSVLRTVCNRMETLNHHENRHVSLARHKLGGSLYNCVAEEIAILLLLWVRDMEADVSKTIELLRGRGVIREGDAILVVSDLADKGLTATTAIQVKIIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Lus10033757 [exp]	0	1
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10009217 [exp]	12.0	0.8714
AT5G02640			unknown protein		Lus10023327 [exp]	14.9	0.8423
AT5G46060			Protein of unknown function, D...		Lus10005266 [exp]	18.7	0.8652
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10013674 [exp]	28.1	0.8600
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Lus10014588 [exp]	35.1	0.8478
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Lus10027335 [exp]	51.8	0.8238
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10033040 [exp]	52.5	0.8159
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10004672 [exp]	56.2	0.8448
AT2G41510		ATCKX1, CKX1	cytokinin oxidase/dehydrogenas...		Lus10035433 [exp]	62.6	0.7886
AT3G61930			unknown protein		Lus10030203 [exp]	64.1	0.8198

Compare expression of checked genes

Lus10033757 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.