Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50020 105 / 3e-28 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012445 [exp] 159 / 2e-45 AT3G22960 479 / 7e-163 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G084800 [exp] 128 / 7e-37 AT1G50020 177 / 8e-56 unknown protein Potri.001G289400 [exp] 122 / 2e-34 AT1G50020 207 / 5e-68 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033758 pacid=23172839 polypeptide=Lus10033758 locus=Lus10033758.g ID=Lus10033758.BGIv1.0 annot-version=v1.0 ATGGCGTCTCTCACCCTTCTCAAATCTGCTGTCTCCCCTTCTTCCTCTTCCGTTTCCCGCTCTAATTTCCCGGCCGGAACCTCCCTTCCCTCCAGACGGA CCGCCGTTAGTAGCTCCCGGCGGTTTAGTAGGTCATCTCAAGTTCGGACTCTAAGACTCAGCGTTTGCTGTGTGGTTCAAGATGGGGATGAGCCGCCCGA GTCTTTGTTCATGAAGGAGTTGAGGAGGAGAGGTATGACTCCGACGTCGCTGCTGGAGGAAACCAAGAAAGGCGCTGGTTTTGGAGTTGACGATGACGAC GACATAATGAAACTAGGAGATGGGGATAGAGTCGGGTCCAAGAGGAATGCAGTTCAGACTGAAATTGATAAAAGTCTCTCCAATCAAAGGGAGCGCTCCA TGGCCTTGAACAGCGAAGGCCTTGAGGGATTGATTCCTCGTGCTAGAGTTTTACTTACTACGGGAGGGACATTCTTCTTGGGGTTTGGGCCGTTGATTCT TGTAACTGTGGGATTTTTCTCTGCTCTCTACTTGGATGAACGAGATACAAAGAGCGATCCATCCGGCTTGAACGGAGCAAAAAGACACTCAGTTATCCAG CGAAGGGAACGTGACTACGAAAGTGATGGGAAAAGGACAAGGAGACTAGTGATGATGAGTATTGGTTAA
AA sequence Show only first row Show all	>Lus10033758 pacid=23172839 polypeptide=Lus10033758 locus=Lus10033758.g ID=Lus10033758.BGIv1.0 annot-version=v1.0 MASLTLLKSAVSPSSSSVSRSNFPAGTSLPSRRTAVSSSRRFSRSSQVRTLRLSVCCVVQDGDEPPESLFMKELRRRGMTPTSLLEETKKGAGFGVDDDD DIMKLGDGDRVGSKRNAVQTEIDKSLSNQRERSMALNSEGLEGLIPRARVLLTTGGTFFLGFGPLILVTVGFFSALYLDERDTKSDPSGLNGAKRHSVIQ RRERDYESDGKRTRRLVMMSIG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50020			unknown protein		Lus10033758 [exp]	0	1
AT3G44880		PAO, LLS1, ACD1	LETHAL LEAF-SPOT 1 HOMOLOG, AC...		Lus10037370 [exp]	3.0	0.8319
AT1G27480			alpha/beta-Hydrolases superfam...		Lus10018664 [exp]	13.7	0.8080
AT2G30100			pentatricopeptide (PPR) repeat...		Lus10042274 [exp]	14.8	0.8270
AT2G30100			pentatricopeptide (PPR) repeat...		Lus10026382 [exp]	15.6	0.8240
AT3G44880		PAO, LLS1, ACD1	LETHAL LEAF-SPOT 1 HOMOLOG, AC...		Lus10041348 [exp]	16.9	0.7906
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10027211 [exp]	18.0	0.8074
AT1G70000	MYB		myb-like transcription factor ...		Lus10010733 [exp]	18.4	0.8159
AT2G37970		SOUL-1	SOUL heme-binding family prote...		Lus10017193 [exp]	18.6	0.8242
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Lus10006621 [exp]	19.0	0.8023
AT4G26850		VTC2	mannose-1-phosphate guanylyltr...		Lus10009725 [exp]	21.4	0.8007

Compare expression of checked genes

Lus10033758 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.