Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76600 139 / 2e-41 unknown protein AT1G21010 133 / 3e-39 unknown protein AT5G66580 73 / 2e-16 unknown protein AT3G50800 70 / 2e-15 unknown protein AT2G23690 68 / 3e-14 unknown protein AT4G37240 65 / 4e-13 unknown protein AT5G12340 44 / 2e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012442 [exp] 312 / 1e-109 AT1G76600 152 / 2e-46 unknown protein Lus10035664 [exp] 174 / 2e-55 AT1G21010 125 / 4e-36 unknown protein Lus10037249 [exp] 172 / 7e-55 AT1G76600 130 / 4e-38 unknown protein Lus10036322 [exp] 113 / 2e-32 AT1G76600 62 / 9e-16 unknown protein Lus10019659 [exp] 74 / 7e-17 AT5G66580 141 / 4e-44 unknown protein Lus10016785 [exp] 59 / 6e-11 AT2G23690 138 / 4e-42 unknown protein Lus10000739 [exp] 57 / 1e-10 AT5G66580 105 / 6e-30 unknown protein Lus10013490 [exp] 40 / 0.0005 AT3G03280 110 / 6e-31 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G259100 [exp] 149 / 1e-45 AT1G21010 186 / 9e-60 unknown protein Potri.002G002100 [exp] 141 / 4e-42 AT1G21010 163 / 1e-50 unknown protein Potri.007G033400 [exp] 71 / 1e-15 AT2G23690 165 / 7e-53 unknown protein Potri.005G130200 [exp] 66 / 6e-14 AT2G23690 174 / 2e-56 unknown protein Potri.004G149600 [exp] 65 / 3e-13 AT4G37240 125 / 5e-37 unknown protein Potri.009G110600 [exp] 62 / 3e-12 AT2G23690 112 / 1e-31 unknown protein Potri.004G149800 [exp] 56 / 5e-10 AT5G66580 91 / 7e-24 unknown protein Potri.009G110700 [exp] 52 / 1e-08 AT5G66580 77 / 2e-18 unknown protein Potri.012G045600 [exp] 51 / 4e-08 AT1G18290 129 / 1e-38 unknown protein Potri.015G036800 [exp] 50 / 9e-08 AT1G18290 122 / 1e-35 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033761 pacid=23172875 polypeptide=Lus10033761 locus=Lus10033761.g ID=Lus10033761.BGIv1.0 annot-version=v1.0 ATGGGATCTTGCTTCTCTTCCTCAGTCTCTGCATCGCCGGCTCCCCCGACGGCCAAAGTCGTCTCAATTAACGGCCATCTCCGTGAGTACGCTCCTCCAG TCTCCGTCTCTCAAGTTCTTATCACATCAGCTTCCGATTACTTCCTCTGCAACTCCGATCTCTTATCCTACGACGAGCAAATCCCCGCTATGGCACCCGA CGTCTTCCTAATCCCTAATCAGTTGTATTTCCTGCTTCCGATCTCCAAGCTGAATTCGAAGCTCACCGCTCCCGATATGGCTGCTTTGGCTGTAAGGGCT AGCCAGGCTATTCAGTGCTCCAATCGCGGCCGCAAAAAGTCGTCCAGCACCATCTCTCCTGTTTTATTCGTCGGCGACGATGTACTACATCGGGATCAGC AGAGTGACCTGGCGTCGCTGCTAATGCTGCAGTCGCAGAAGCCCAAGGCGGAGCAGGCCGGTGGTGATGGTCAATTTCGGAGGTCTAGATCTATTAGGAA GTTGCAAAGGTATGCTTCCAGACGAGCCAAGCTGGCTGTTCGTTCGTTCCGGCTCGGATTGGCCACCATTTATGAAGGCACCGCCCTTTAA
AA sequence Show only first row Show all	>Lus10033761 pacid=23172875 polypeptide=Lus10033761 locus=Lus10033761.g ID=Lus10033761.BGIv1.0 annot-version=v1.0 MGSCFSSSVSASPAPPTAKVVSINGHLREYAPPVSVSQVLITSASDYFLCNSDLLSYDEQIPAMAPDVFLIPNQLYFLLPISKLNSKLTAPDMAALAVRA SQAIQCSNRGRKKSSSTISPVLFVGDDVLHRDQQSDLASLLMLQSQKPKAEQAGGDGQFRRSRSIRKLQRYASRRAKLAVRSFRLGLATIYEGTAL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76600			unknown protein		Lus10033761 [exp]	0	1
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Lus10043044 [exp]	1.7	0.9806
AT1G72360	AP2_ERF	AtERF73, HRE1	HYPOXIA RESPONSIVE ERF \(ETHYL...		Lus10008214 [exp]	2.6	0.9840
					Lus10018421 [exp]	3.2	0.9839
AT3G05550			Hypoxia-responsive family prot...		Lus10029883 [exp]	4.9	0.9805
AT1G32160			Protein of unknown function (D...		Lus10035392 [exp]	7.4	0.9786
AT2G19860		ATHXK2	ARABIDOPSIS THALIANA HEXOKINAS...		Lus10012946 [exp]	7.9	0.9738
AT5G59350			unknown protein		Lus10004955 [exp]	8.5	0.9753
AT2G18670			RING/U-box superfamily protein...		Lus10019979 [exp]	8.9	0.9737
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10003371 [exp]	9.0	0.9625
AT1G72360	AP2_ERF	AtERF73, HRE1	HYPOXIA RESPONSIVE ERF \(ETHYL...		Lus10003601 [exp]	9.5	0.9785

Compare expression of checked genes

Lus10033761 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.