Plant FIBer expression Database

Lus10033762 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G23780 192 / 2e-54 F-box family protein (.1)
AT1G23770 138 / 5e-36 F-box family protein (.1)
AT1G70360 91 / 5e-21 F-box family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012441
[exp]
810 / 0 AT1G23780 215 / 3e-63 F-box family protein (.1)
Lus10011411
[exp]
336 / 6e-112 AT1G23770 110 / 5e-28 F-box family protein (.1)
Lus10006138
[exp]
88 / 2e-20 AT1G23770 53 / 3e-09 F-box family protein (.1)
Lus10006139
[exp]
83 / 4e-19 AT1G23780 62 / 3e-12 F-box family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G109700
[exp]
325 / 3e-104 AT1G23780 244 / 2e-74 F-box family protein (.1)
Potri.017G134500
[exp]
61 / 5e-11 AT1G23780 0 / 1 F-box family protein (.1)
Potri.015G020600
[exp]
0 / 1 AT1G23780 0 / 1 F-box family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF11566 PI31_Prot_N PI31 proteasome regulator N-terminal
Representative CDS sequence
>Lus10033762 pacid=23172790 polypeptide=Lus10033762 locus=Lus10033762.g ID=Lus10033762.BGIv1.0 annot-version=v1.0
ATGATCGATATCTCTTCCTCTTGCTTGCTCTGTAAACTCCCGCAATCCCGGATTGTGATTTTCCCAACTCTAGGCCTTCTCCTTCGTGCTCCTTTCTCAG
TTCGCGCCATGAAATTGCGGCTTAGATCTCTTCAATCCAATCAAACTCTCAAGCTGGAAGTTCCTGAAACATGCACTCTCCACGAGCTCGCACAAATTCT
TTACGAATCCCTCTCTTCGCCTCCTCCATCAACATCTCCTCCCCGTTTCTCTCTTAATCGAAAGGAGGAGCTCCTCGGATCTTCCCCCGTCGAGCCTCTC
CGTTCGCTAGGGATTACCTCTGGTGATTTAATCTACTTCTCTTTTGATGCCTATAATTTATCTCCGGTTCCGACAGATGGAACCCTAGCCTCAGCCTCGG
TTTCGAGATCTGCGGCCGCTTCTAAATGGGGTAACTTTGATTCAGATAATAATAGTACTAGTGATGTCAATTTAGGGACTAGTTCTGGAATTGATGGTGG
TTCTGGGCTTTTGGGTGTTGATGAAGATATGAAGGGGGAAATTTCGAATGTGAATTCAGGTGTAGATGAGCAACGTGATTTTGTTGATGGTTGTGAAAAA
TCATATGCTTGTGATAGTATGGATATTGATGCGGTACCATCTGAAGATGTTGTTGTTGTTAGTAGCAAAAGGTTCTCCGAGCCTTACTTTCTACGAAGGG
TATTGAGGGAAGAACTGGTGGATTGCAACAGTCATCACAAGCTATTGGTGGCTGCAATTCATGCAGTTTTTCTTGAGTCGGGATTTGTTGGGTATGATTC
CCTCTCTGGGAGCAGAATTCATCAGCTTCACATTGCTGTAGACTGGCCTTCGAGGCAGTCTACATTCTCAATCTTGTATACTCTCCCTGAACTGCTGGGC
AAGGATGTGTCGGTTGCATTGAAGTTCCAAACTTTGGGCAACTTTTTGAATGCTCTCGGTTCTATGGCTACTGGAGGCTCAAATATGCATCGCCTGTGCT
TGAATGCAAGCACTTATGCCCCAACTCTGCGTCAGATCTGGCAATTGAATTCCCGCAACAACATGGCGGCAGAGGATGATGAGTCTATCATGGGCATGTG
TTCTTGTGAAAACGAGGTTTTCAAGTTCTGGAAAGATGTCAAGGATGGGCTTTGTCTTCCGTCACTGATCGATCTCTGTGAGAACGCCGGTTTCCCTATG
CCATCCTGTTTCTCAAGCCTCCCAACTGATCTCAAGCTCAGCATCTTGACATTGCTTCCTGGAATTGATATTGCACGGATGGAGTGTGTTTCCATGGAGA
CGCGATATCTATCGTCAAACAATGAGCTGTGGAAGCAGAAGTTTGCAGAAGAGTTTGGGAATGAACAACTCCAAACTAGTACCGTGGTGGTGAATTGGAA
GCAGAAGTTTGCTAGCGAAGTGGTGAGCAAGAAGAAGCGCAAAAGGGATGCAATGCTTAGAGAAAGAGATAGAGTTCGTGTAGGACACATGGTGAGCCCT
TTACCTCGAAATAACAGAGGCCATTATCCACTGATCTGGGGTGAAGATCATGACCTCATCCCGGGACTGGGCATTCCGTCTCCTTTCCCGGGTTTTGGTC
CTGGCATGGGTGGAGATCATGACATCATCCCGGGACTGCGCATCCCATCTCCTTTCCCCGGTGTTGGTCCTGGCATGGGCGACCCTCATCTTTTTATCAC
GCGGAACAGTGATCCGAGTTTCCAGCAGCGTAGGCGAAGAATGTCCCGTAATGTCAGTATCATTTAA
AA sequence
>Lus10033762 pacid=23172790 polypeptide=Lus10033762 locus=Lus10033762.g ID=Lus10033762.BGIv1.0 annot-version=v1.0
MIDISSSCLLCKLPQSRIVIFPTLGLLLRAPFSVRAMKLRLRSLQSNQTLKLEVPETCTLHELAQILYESLSSPPPSTSPPRFSLNRKEELLGSSPVEPL
RSLGITSGDLIYFSFDAYNLSPVPTDGTLASASVSRSAAASKWGNFDSDNNSTSDVNLGTSSGIDGGSGLLGVDEDMKGEISNVNSGVDEQRDFVDGCEK
SYACDSMDIDAVPSEDVVVVSSKRFSEPYFLRRVLREELVDCNSHHKLLVAAIHAVFLESGFVGYDSLSGSRIHQLHIAVDWPSRQSTFSILYTLPELLG
KDVSVALKFQTLGNFLNALGSMATGGSNMHRLCLNASTYAPTLRQIWQLNSRNNMAAEDDESIMGMCSCENEVFKFWKDVKDGLCLPSLIDLCENAGFPM
PSCFSSLPTDLKLSILTLLPGIDIARMECVSMETRYLSSNNELWKQKFAEEFGNEQLQTSTVVVNWKQKFASEVVSKKKRKRDAMLRERDRVRVGHMVSP
LPRNNRGHYPLIWGEDHDLIPGLGIPSPFPGFGPGMGGDHDIIPGLRIPSPFPGVGPGMGDPHLFITRNSDPSFQQRRRRMSRNVSII

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G23780 F-box family protein (.1) Lus10033762
[exp]
0 1
AT3G55700 UDP-Glycosyltransferase superf... Lus10004671
[exp]
1.0 0.9103
AT1G29690 CAD1 constitutively activated cell ... Lus10025153
[exp]
2.4 0.8687
AT4G02720 unknown protein Lus10042601
[exp]
2.8 0.8777
AT5G40880 WD-40 repeat family protein / ... Lus10014612
[exp]
2.8 0.8424
AT4G02720 unknown protein Lus10022052
[exp]
5.9 0.8623
AT3G05675 BTB/POZ domain-containing prot... Lus10033220
[exp]
8.8 0.8593
AT2G25290 Phox1 Phox1, Octicosapeptide/Phox/Be... Lus10006196
[exp]
8.8 0.8144
AT1G43690 ubiquitin interaction motif-co... Lus10024546
[exp]
9.8 0.8675
AT2G30160 Mitochondrial substrate carrie... Lus10042258
[exp]
10.8 0.8417
AT3G60030 SBP SPL12 squamosa promoter-binding prot... Lus10004523
[exp]
10.9 0.8465

Lus10033762 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.