Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39190 210 / 2e-67 ATGER2, GLP2A GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) AT5G39130 210 / 4e-67 RmlC-like cupins superfamily protein (.1) AT5G39160 209 / 5e-67 RmlC-like cupins superfamily protein (.1.2.3) AT3G05950 202 / 9e-64 RmlC-like cupins superfamily protein (.1) AT5G39110 201 / 2e-63 RmlC-like cupins superfamily protein (.1) AT5G39150 199 / 1e-62 RmlC-like cupins superfamily protein (.1) AT5G39120 198 / 3e-62 RmlC-like cupins superfamily protein (.1) AT5G38940 197 / 4e-62 RmlC-like cupins superfamily protein (.1) AT5G39180 197 / 8e-62 RmlC-like cupins superfamily protein (.1) AT5G38960 191 / 2e-59 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003114 [exp] 267 / 2e-89 AT5G39150 303 / 2e-105 RmlC-like cupins superfamily protein (.1) Lus10006543 [exp] 267 / 2e-89 AT5G39150 303 / 2e-105 RmlC-like cupins superfamily protein (.1) Lus10033767 [exp] 263 / 1e-87 AT5G39150 298 / 2e-103 RmlC-like cupins superfamily protein (.1) Lus10000622 [exp] 260 / 2e-86 AT5G39130 307 / 7e-107 RmlC-like cupins superfamily protein (.1) Lus10003116 [exp] 259 / 6e-86 AT5G39150 303 / 2e-105 RmlC-like cupins superfamily protein (.1) Lus10006538 [exp] 258 / 6e-86 AT5G39120 313 / 3e-109 RmlC-like cupins superfamily protein (.1) Lus10006536 [exp] 258 / 1e-85 AT5G39150 308 / 2e-107 RmlC-like cupins superfamily protein (.1) Lus10035185 [exp] 196 / 1e-61 AT5G39160 265 / 2e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10035186 [exp] 195 / 4e-61 AT5G39190 265 / 2e-90 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G026200 [exp] 242 / 1e-79 AT3G05950 308 / 2e-107 RmlC-like cupins superfamily protein (.1) Potri.019G026400 [exp] 242 / 2e-79 AT3G05950 288 / 2e-99 RmlC-like cupins superfamily protein (.1) Potri.019G026500 [exp] 242 / 2e-79 AT3G05950 288 / 2e-99 RmlC-like cupins superfamily protein (.1) Potri.019G025800 [exp] 241 / 3e-79 AT3G05950 288 / 3e-99 RmlC-like cupins superfamily protein (.1) Potri.019G025900 [exp] 241 / 3e-79 AT3G05950 288 / 3e-99 RmlC-like cupins superfamily protein (.1) Potri.019G026000 [exp] 241 / 3e-79 AT3G05950 288 / 3e-99 RmlC-like cupins superfamily protein (.1) Potri.019G026700 [exp] 240 / 1e-78 AT3G05950 286 / 1e-98 RmlC-like cupins superfamily protein (.1) Potri.013G063050 [exp] 215 / 5e-69 AT5G39130 281 / 1e-96 RmlC-like cupins superfamily protein (.1) Potri.013G063051 [exp] 214 / 7e-69 AT5G39130 284 / 5e-98 RmlC-like cupins superfamily protein (.1) Potri.013G063001 [exp] 214 / 1e-68 AT5G39130 284 / 6e-98 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10033764 pacid=23172739 polypeptide=Lus10033764 locus=Lus10033764.g ID=Lus10033764.BGIv1.0 annot-version=v1.0 ATGATGGTCCAAGATGCTACAGAAGAAACCAAGTTAGTAATCTTCGACTATGAAGGCAACAGGTTTTTCAAGCTTATAGCCAACGAACTGTATGAACAGA ATGGATGCAGTCACAACACCACTTCCAAACTCATGATGCAGTTAGTTGATAAGGAAATGAAATTCCACATCAAACTCCCATCATACACTATGGCGTATCC AGGAACAGAATATACTGTCTCCAGGATTCTTGAAGATCAACTTACAACTCCATCTCCGCCAAAAATGGAAATTGATGGTCTTTTCACAAGTGGACATTCA TCTTCTCAGTCACTTAGCAGCACCATTTCAAATGTCGAAACCCAAAACACAGTTGCAATAGATGATATTCCACCTCCAATTGATGTGGCTGGAAATACAG TTGCTGTCAAAGATAAACTTGAGAGTCCAATTTGCCTAGATGATGACACCTGTGATGAACTTAGTGATGACATGATACTAGCAAAAGCAAAGGAGAAGAT CACTAAAATGAACAAAGTTTTCTGGAACAAAAACGGACTCAACATTCCCAAAAACACATCCTCAAACAAAGTGGATTCGAATGTCACTCTTCTCAATGTC GACAAGATTCCAGGGCTCAACACTTTAGGAATTTCATTAGCTCGTCTCGACTATGCTCCCAACGGAGGGCTCAACCCGCCCCACACCCACCCCCGTGGAA TCGAAATTCTGGTGGTCATTCAGGGCAAACTCTACGTTGGGTTTGTTACTTTCAACCCAAATAATCGTTTCATCAGCAAGGTGCTTTACCCCGGTGATGT ATTTTTTTTCCCGATTGGGCTCGTTCATTTCCAACTCAACATCGACCGAGCTCCAACTATGGCGTTTGCTGAGTTGAGCGGCCAGAACCCTGGCATCATC ACCATAGCTAATACAATGTTCGGCTCAAATCCGTTTATCAATCCAAATATTTTGACCAAGGCGTTTCAGTTGAACGAGGATCTTGTGGTGCATCTACAAA AGAAGTTTGCTAAAACCTAA
AA sequence Show only first row Show all	>Lus10033764 pacid=23172739 polypeptide=Lus10033764 locus=Lus10033764.g ID=Lus10033764.BGIv1.0 annot-version=v1.0 MMVQDATEETKLVIFDYEGNRFFKLIANELYEQNGCSHNTTSKLMMQLVDKEMKFHIKLPSYTMAYPGTEYTVSRILEDQLTTPSPPKMEIDGLFTSGHS SSQSLSSTISNVETQNTVAIDDIPPPIDVAGNTVAVKDKLESPICLDDDTCDELSDDMILAKAKEKITKMNKVFWNKNGLNIPKNTSSNKVDSNVTLLNV DKIPGLNTLGISLARLDYAPNGGLNPPHTHPRGIEILVVIQGKLYVGFVTFNPNNRFISKVLYPGDVFFFPIGLVHFQLNIDRAPTMAFAELSGQNPGII TIANTMFGSNPFINPNILTKAFQLNEDLVVHLQKKFAKT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39190		ATGER2, GLP2A	GERMIN-LIKE PROTEIN 2A, A. THA...		Lus10033764 [exp]	0	1
AT1G05660			Pectin lyase-like superfamily ...		Lus10010584 [exp]	1.0	0.8214
AT2G16910	bHLH	AMS, bHLH021	ABORTED MICROSPORES, basic hel...		Lus10042395 [exp]	2.0	0.7946
AT4G17905		ATL4H	RING/U-box superfamily protein...		Lus10025338 [exp]	5.3	0.7604
AT2G02450	NAC	LOV1, ANAC034, ...	LONG VEGETATIVE PHASE 1, Arabi...		Lus10003366 [exp]	6.9	0.6768
AT5G61730		ABCA9, ATATH11	ARABIDOPSIS THALIANA ABC2 HOMO...		Lus10042172 [exp]	8.4	0.6467
AT1G07260		UGT71C3	UDP-glucosyl transferase 71C3 ...		Lus10010474 [exp]	10.0	0.6578
					Lus10032733 [exp]	12.0	0.6295
AT5G25180		CYP71B14	"cytochrome P450, family 71, s...		Lus10033634 [exp]	14.0	0.7734
AT3G45280		ATSYP72, SYP72	syntaxin of plants 72 (.1)		Lus10036118 [exp]	17.7	0.7399
AT1G17810		BETA-TIP	beta-tonoplast intrinsic prote...		Lus10040652 [exp]	20.0	0.7427

Compare expression of checked genes

Lus10033764 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.