Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14660 180 / 6e-59 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G085700 [exp] 191 / 4e-63 AT2G14660 186 / 1e-61 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [flax] [poplar] PUA PF01878 [flax] [poplar] EVE EVE domain
Representative CDS sequence Show only first row Show all	>Lus10033766 pacid=23172789 polypeptide=Lus10033766 locus=Lus10033766.g ID=Lus10033766.BGIv1.0 annot-version=v1.0 ATGACGGATAGCGGGGAAAGAAAGAAACAGTTCTGGCTTTTAAAGACGGAGCCAGGGGAGTGGTCATGGGAGGACCAGTCAGCCAACGCCGGATTAAGCA ACTGGGACGGAGTGAAGAACAAGCAAGCCCAGAAAAATCTCAAGTCCATGCGCCTCGGAGACCTCTGCTTCTTCTACCACTCCGGATCCCGCGCACGACG GGTGGTCGGCGTCGTCACCGTGTCGAAGGAGTGGTACGAACCAGCGGCGGCCGGCGAAGGAGTGGTGGACGTGAAGGCTGTCGGGGAGATGAGGAGGCAC GTGGATCTGAAGGAGATGAAAGGCGACGATGGATTGAAGGGCTTTGCTCTCTTCAGGCAGCCTAGGTTGTCGGTGGTGCCTGTGCCGGAAGAGGTTTGGG ATAGGGTTTGTGAATTGGGGGGCGGATTCGACGGAGATGGTAAGATAGACGGCGGCGGTGATGACGAGGAGGAGGATTAG
AA sequence Show only first row Show all	>Lus10033766 pacid=23172789 polypeptide=Lus10033766 locus=Lus10033766.g ID=Lus10033766.BGIv1.0 annot-version=v1.0 MTDSGERKKQFWLLKTEPGEWSWEDQSANAGLSNWDGVKNKQAQKNLKSMRLGDLCFFYHSGSRARRVVGVVTVSKEWYEPAAAGEGVVDVKAVGEMRRH VDLKEMKGDDGLKGFALFRQPRLSVVPVPEEVWDRVCELGGGFDGDGKIDGGGDDEEED

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G14660			unknown protein		Lus10033766 [exp]	0	1
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Lus10019214 [exp]	2.2	0.8987
AT4G28100			unknown protein		Lus10018524 [exp]	2.6	0.8938
AT1G69560	MYB	LOF2, ATMYB105	LATERAL ORGAN FUSION 2, myb do...		Lus10026611 [exp]	3.5	0.8981
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10034690 [exp]	4.0	0.9084
AT3G18880			Nucleic acid-binding, OB-fold-...		Lus10028815 [exp]	4.2	0.8677
AT4G10810			unknown protein		Lus10010114 [exp]	7.1	0.8795
AT1G47200		WPP2	WPP domain protein 2 (.1)		Lus10042643 [exp]	7.5	0.8992
AT5G27690			Heavy metal transport/detoxifi...		Lus10031495 [exp]	8.4	0.8720
AT1G69560	MYB	LOF2, ATMYB105	LATERAL ORGAN FUSION 2, myb do...		Lus10030452 [exp]	10.4	0.9036
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10014359 [exp]	12.1	0.9182

Compare expression of checked genes

Lus10033766 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.