Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39150 290 / 4e-100 RmlC-like cupins superfamily protein (.1) AT5G39120 290 / 4e-100 RmlC-like cupins superfamily protein (.1) AT5G39180 289 / 6e-100 RmlC-like cupins superfamily protein (.1) AT5G39190 289 / 7e-100 ATGER2, GLP2A GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) AT5G39130 289 / 8e-100 RmlC-like cupins superfamily protein (.1) AT5G39160 288 / 2e-99 RmlC-like cupins superfamily protein (.1.2.3) AT5G39110 283 / 1e-97 RmlC-like cupins superfamily protein (.1) AT3G05950 280 / 6e-96 RmlC-like cupins superfamily protein (.1) AT5G38940 271 / 6e-93 RmlC-like cupins superfamily protein (.1) AT5G38930 258 / 1e-87 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003116 [exp] 402 / 2e-144 AT5G39150 303 / 2e-105 RmlC-like cupins superfamily protein (.1) Lus10006538 [exp] 380 / 1e-135 AT5G39120 313 / 3e-109 RmlC-like cupins superfamily protein (.1) Lus10000622 [exp] 378 / 1e-134 AT5G39130 307 / 7e-107 RmlC-like cupins superfamily protein (.1) Lus10003114 [exp] 376 / 3e-134 AT5G39150 303 / 2e-105 RmlC-like cupins superfamily protein (.1) Lus10006543 [exp] 376 / 3e-134 AT5G39150 303 / 2e-105 RmlC-like cupins superfamily protein (.1) Lus10006536 [exp] 370 / 7e-132 AT5G39150 308 / 2e-107 RmlC-like cupins superfamily protein (.1) Lus10021980 [exp] 260 / 2e-88 AT5G39160 249 / 5e-84 RmlC-like cupins superfamily protein (.1.2.3) Lus10003267 [exp] 259 / 4e-88 AT5G39130 257 / 4e-87 RmlC-like cupins superfamily protein (.1) Lus10042517 [exp] 258 / 3e-87 AT5G39160 251 / 4e-85 RmlC-like cupins superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G026200 [exp] 329 / 1e-115 AT3G05950 308 / 2e-107 RmlC-like cupins superfamily protein (.1) Potri.019G025800 [exp] 327 / 2e-114 AT3G05950 288 / 3e-99 RmlC-like cupins superfamily protein (.1) Potri.019G025900 [exp] 327 / 2e-114 AT3G05950 288 / 3e-99 RmlC-like cupins superfamily protein (.1) Potri.019G026000 [exp] 327 / 2e-114 AT3G05950 288 / 3e-99 RmlC-like cupins superfamily protein (.1) Potri.019G026400 [exp] 324 / 1e-113 AT3G05950 288 / 2e-99 RmlC-like cupins superfamily protein (.1) Potri.019G026500 [exp] 324 / 1e-113 AT3G05950 288 / 2e-99 RmlC-like cupins superfamily protein (.1) Potri.019G026700 [exp] 323 / 2e-113 AT3G05950 286 / 1e-98 RmlC-like cupins superfamily protein (.1) Potri.013G052000 [exp] 289 / 1e-99 AT5G39110 282 / 5e-97 RmlC-like cupins superfamily protein (.1) Potri.013G052100 [exp] 287 / 4e-99 AT5G39110 285 / 2e-98 RmlC-like cupins superfamily protein (.1) Potri.013G063001 [exp] 285 / 2e-98 AT5G39130 284 / 6e-98 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10033767 pacid=23172755 polypeptide=Lus10033767 locus=Lus10033767.g ID=Lus10033767.BGIv1.0 annot-version=v1.0 ATGATGATCAAAGGCTCTCATTTCATCCTAGGAGCAGTACTTGGGTGCCTCCTGGCTCTGTCTTCGTTGTGCTCCGCCTACGATCCAAGCCCTCTCCAGG ATTTTTGCGTCGCCATTGATGATCCTAAATACGGAGTATTTGTGAATGGCAAGTTCTGCAAGGATCCAATGCAGGCCAAAGCAGAGAATTTCTCCTTTAA AGGACTCAACGTCCCCAGAGACACATCTAATCAAGTGGGTTCGAACGTCACTCTTCTGAACGTTGACCAAATTCCAGGCCTCAATACCTTAGGAATCTCC CTGGCTCGTCTCGACTACGCTCCCAACGGAGGGCTCAACCCGCCCCACATACATCCTCGTGGTACAGAGATCCTGGTTGTTCAACAAGGCATACTCTATG TCGGGTTCGTTACTTCCAACCCAGATAATCGTCTCATAAGCAAGGTCTTGTACCCGGGTGACGTGTTTGTTTTTCCGATCGGACTCATCCACTTCCAGTT CAACGTTGACAAAGCTCCTGCTGTGGCGTTCGCCGGATTGAGCAGCCAGAATCCAGGCGTTATCACCATAGCTAATGCAGTGTTCGGCTCAAACCCGTCG ATTAACCCTGATGTTTTGACCAAGGCTTTCCAGCTAAATGACGATGTCGTGGCTGATCTGCAAAAGAAGTTTGCTAAAAATTAA
AA sequence Show only first row Show all	>Lus10033767 pacid=23172755 polypeptide=Lus10033767 locus=Lus10033767.g ID=Lus10033767.BGIv1.0 annot-version=v1.0 MMIKGSHFILGAVLGCLLALSSLCSAYDPSPLQDFCVAIDDPKYGVFVNGKFCKDPMQAKAENFSFKGLNVPRDTSNQVGSNVTLLNVDQIPGLNTLGIS LARLDYAPNGGLNPPHIHPRGTEILVVQQGILYVGFVTSNPDNRLISKVLYPGDVFVFPIGLIHFQFNVDKAPAVAFAGLSSQNPGVITIANAVFGSNPS INPDVLTKAFQLNDDVVADLQKKFAKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39150			RmlC-like cupins superfamily p...		Lus10033767 [exp]	0	1
AT1G60680		AGD2	NAD(P)-linked oxidoreductase s...		Lus10004399 [exp]	4.0	0.9651
AT3G12910	NAC		NAC (No Apical Meristem) domai...		Lus10036194 [exp]	6.3	0.9569
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10032641 [exp]	8.0	0.9571
					Lus10031841 [exp]	9.2	0.9630
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10019457 [exp]	9.4	0.9467
AT5G59100			Subtilisin-like serine endopep...		Lus10004686 [exp]	10.8	0.9632
AT1G29860	WRKY	ATWRKY71, WRKY7...	WRKY DNA-binding protein 71 (....		Lus10004537 [exp]	11.6	0.9444
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10023271 [exp]	12.7	0.9465
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10020493 [exp]	15.6	0.9409
AT3G52105			unknown protein		Lus10016415 [exp]	16.1	0.9271

Compare expression of checked genes

Lus10033767 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.