Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43980 394 / 5e-135 ATITPK4 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1) AT5G16760 81 / 9e-17 AtITPK1 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) AT4G08170 60 / 9e-10 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) AT4G33770 55 / 5e-08 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006145 [exp] 530 / 0 AT2G43980 317 / 1e-105 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1) Lus10035662 [exp] 85 / 4e-18 AT4G08170 455 / 2e-161 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10035811 [exp] 79 / 4e-16 AT5G16760 311 / 1e-105 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Lus10038765 [exp] 76 / 4e-15 AT5G16760 350 / 4e-121 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Lus10039098 [exp] 77 / 5e-15 AT5G55990 374 / 1e-128 calcineurin B-like protein 2 (.1) Lus10032808 [exp] 67 / 7e-12 AT4G08170 500 / 5e-179 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10007689 [exp] 63 / 9e-11 AT4G08170 499 / 2e-178 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10037247 [exp] 60 / 6e-10 AT4G08170 345 / 3e-119 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10020513 [exp] 52 / 2e-07 AT4G08170 331 / 2e-113 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G007500 [exp] 455 / 1e-158 AT2G43980 534 / 0.0 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1) Potri.007G144701 [exp] 140 / 2e-40 AT2G43980 145 / 1e-41 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1) Potri.001G140000 [exp] 81 / 1e-16 AT5G16760 372 / 6e-129 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Potri.005G149800 [exp] 79 / 5e-16 AT4G08170 518 / 0.0 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Potri.019G047200 [exp] 77 / 2e-15 AT5G16760 332 / 1e-113 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Potri.003G094100 [exp] 77 / 3e-15 AT5G16760 373 / 2e-129 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Potri.009G084600 [exp] 67 / 5e-12 AT4G08170 379 / 1e-131 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0179 [flax] [poplar] ATP-grasp PF05770 [flax] [poplar] Ins134_P3_kin Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain
Representative CDS sequence Show only first row Show all	>Lus10033768 pacid=23172811 polypeptide=Lus10033768 locus=Lus10033768.g ID=Lus10033768.BGIv1.0 annot-version=v1.0 ATGGCATCTCCTCAGAATCCAGAAACATTTGATGGAGGTATCAAAGGGAAATATCAAAAGGATGAAGAAAAGGTTGATAAGGGACTTGGCGACAGCCTTG TCACAGTTGGTTATATCATGAAGCCTTCTCGCAAAGAGGATTTCTCTAAGAGAGGTGCCTTCCCAAACGGTGGAACTCCGAACGGATTGATGTTTCGACC TCTGTCCTTTGATAAGCCTCTGCTACCTCAATTAGAAGGTGTTGACATAATTCTCCATAAAGCAACGGATGAAATCATCTCTGTTGAGTTATGCGACTCG GAATTGTTGAATGCAATCACTTACACAGCAGGCATGCAGGAATTAAAAAGATACATGGAACAGCATGTTGAATGTTGTGTAATTGATCCATTAGCTAAAA TATATCCTGTGGTGGATCGACTAACGATGCAACGAATTCTGCATGGTTTGGAGGATGTTAACAAAGGACGGCGATGCACCATCAGAGGACCCAGTTTCTT AAAGATTGATGACTTCAATGACCTGGAGATGGATCAAAGACTAGCAGGAGCTAAACTATCCTTCCCAATCATAGTGAAACCTCAAGTTGCTTGTGGTGTT GCTGATGCTCATAGTATGGCGATTGTCTTCAAATCTGAAGATTTCAAGAATCTAAGTGTTCCTCTTCCAGCTGTTGCCCAGGCTAGTATGCATGTTTCAG TTTCTTATGTTCTTGAAAAGATTGAGTATGTAAACCATTCATCAAGGCTGCTCAAAGCTTATGTCCTCGGCAAGAAGGTTTTCTATGCCGTGAAGAGGTC TGTACCAAATGCTGATATATTGCTGAAAATGGCAGAAAATAATGGGAGTGGGCCTTTACTCTTTGACAGCTTGAAATCTTTACCAATCAACTCGGACGAT CGAGATTCCTCCAGCTGCAACTTGGCCCACTTTGATATTGAATTAGTTACTGAAGCTGCATACTGGTTGACAAGGAAACTTGACCTTACTGTCTTTGGCT TCGATGTCGTTGTCGAGGAAGATAGCAATGAGCATGTGATCGTAGATGTGAATTACTTTCCATCATTCAAGGAAGTGGGAGATGATGTCGCCATACCGGC CTTCTGGGATGCAATCAGACAAAAATTTGAATCCATGAAAACCTAG
AA sequence Show only first row Show all	>Lus10033768 pacid=23172811 polypeptide=Lus10033768 locus=Lus10033768.g ID=Lus10033768.BGIv1.0 annot-version=v1.0 MASPQNPETFDGGIKGKYQKDEEKVDKGLGDSLVTVGYIMKPSRKEDFSKRGAFPNGGTPNGLMFRPLSFDKPLLPQLEGVDIILHKATDEIISVELCDS ELLNAITYTAGMQELKRYMEQHVECCVIDPLAKIYPVVDRLTMQRILHGLEDVNKGRRCTIRGPSFLKIDDFNDLEMDQRLAGAKLSFPIIVKPQVACGV ADAHSMAIVFKSEDFKNLSVPLPAVAQASMHVSVSYVLEKIEYVNHSSRLLKAYVLGKKVFYAVKRSVPNADILLKMAENNGSGPLLFDSLKSLPINSDD RDSSSCNLAHFDIELVTEAAYWLTRKLDLTVFGFDVVVEEDSNEHVIVDVNYFPSFKEVGDDVAIPAFWDAIRQKFESMKT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43980		ATITPK4	"inositol 1,3,4-trisphosphate ...		Lus10033768 [exp]	0	1
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Lus10026874 [exp]	2.0	0.8150
AT3G53320			unknown protein		Lus10023170 [exp]	6.6	0.8393
AT3G20630		PER1, ATUBP14, ...	TITAN6, phosphate deficiency r...		Lus10037870 [exp]	6.9	0.8271
AT3G53320			unknown protein		Lus10019909 [exp]	9.3	0.8162
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10018933 [exp]	18.5	0.7602
AT1G29370			Kinase-related protein of unkn...		Lus10007339 [exp]	19.6	0.7912
AT3G58570			P-loop containing nucleoside t...		Lus10030075 [exp]	26.3	0.7579
AT4G25120		ATSRS2	ARABIDOPSIS THALIANA SUPPRESSO...		Lus10016712 [exp]	27.8	0.8082
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Lus10004353 [exp]	28.2	0.7584
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Lus10022483 [exp]	30.2	0.7803

Compare expression of checked genes

Lus10033768 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.