Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31890 662 / 0 ATRAP RAP (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006144 [exp] 630 / 0 AT2G31890 435 / 1e-149 RAP (.1) Lus10006143 [exp] 336 / 6e-112 AT2G31890 107 / 3e-26 RAP (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G001600 [exp] 794 / 0 AT2G31890 739 / 0.0 RAP (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0236 [flax] [poplar] PDDEXK PF08373 [flax] [poplar] RAP RAP domain
Representative CDS sequence Show only first row Show all	>Lus10033769 pacid=23172724 polypeptide=Lus10033769 locus=Lus10033769.g ID=Lus10033769.BGIv1.0 annot-version=v1.0 ATGGACGGGTTACTTACCGCATTTCCTCATCGTAGTTGCTTACAATCTCTCATTTTCAATCATACACTGGTCTCCAATGCTCCACCGATTAGATTAGGGA CTGTGTCTCTTAATCAAAGGCTCCAGTTAGTAGGTGTTGAACGAATGAAATGTATGAATTCACCAGCTACTGATACTAGTGGTGTTGTGGATGAAGAGGG TGTTAAGGATGTTGAAGACTGGGAATTAGAGTTTCTTGGAAAGGCTGGTTCTTCGGGTTTTCGAGAATCATCCACGAAAAGGAAGACGGGCAAAGGATCG ACCTTGCTAGAGGGTGAAGATGAGATGGATTGGTGTCTGAGGGCGAGGAAGGTTGCCCTCAAATCTATTGAGACAAGGGGATTGAGTTACAAGATGGAAC AATTGGTTAGTGGGAACACAAAAAAGAAGAACAAAACAAAGAAAAAATTGGTGACCAAAAGCAAGAAGAAGAAGAATGAACAAGAATTTGAAGAGGATTT GGACTTGGATGAGGTAGAACGGATTCTTGATGATGATACTTCTGACCTCCAAAGAAAAGTTAGTATGATGGGAGACGGTATGTTCGAAGAGCAGAAGGAG AAGGCAATGGAAGAGTTTGTAAAGAAGTTGTCTCAGTTCTCTGGACCTTCTGATCGTAAGAAGGAGGTTAATATGAACAGAGCAATTGTCGAAGCTCAAA CTGCTGAAGAAGTGATGGAAGTCACTGCCGATGTTATTATGGCCGGGGGGGGGGGCGGCTTGACCCCTTCACCCCTGTCCCCTTTGAATATTGCTACTGC CCTTCACAGAATTGCTAAGAACATGGAAAAGGTTTCGATGATGAAAACTCACCGCTTAGCATTTGCAAGGCAAAGAGAGATGTCAATGCTGGTTGGTATT GCCATGACAGCATTACCCGAATGCTCAGCTCAAGGCATATCAAATATTTCATGGGCGCTATCCAAGATTGGAGGAGAGCTGCTTTACATGTCGGAAATGG ATAGAGTTGCTGAAGTTGCCTTAACCAGGGTGAATGAGTTCAATTCTCAGAATGTTGCTAATGTTGCCGGTGCTTTCGCATCAATGCAGCACTCGGCTCC TCATCTCTTTTCCGAATTAGGAAAAAGGGCAGGTGAGATCATACATACATTCCAGGAGCAGGAGCTTGCTCAGGTATTGTGGGCGTTCGCTGCATTGTTT GAGCCTGCTGATCCTTTGCTCAACTCTTTAGATATTGTGTTCAAGGAGGCAAACCAGTTTGAGTGGTCAGATGTGCCAGCTTCTGACAAAAATCTCGAAG TGGTGGAGGTTCCGTTGTTGAGGTTAAATAGGGATCAGCTGGGCAATATTGCATGGTCGTACGCTGTTCTTGGGCAGTTGGACCATACATTTTTCGCTAA TGTCTGGAGAACGATGAGTCGTTTCGAGGACCAAAGGATTTCGGAGCAGTATCGGGAGGATATGATGTTTGCTTCTCAGGTTCGTCTTGTGAACCAATGT CTGAAGCTTGAATATCCGCATCTTGAGATGTCACTTGGAAATGATGTGGAGGAGAGGATATGTCGTGCAGGAAGAAGCAAGAGGTTCAATCAGAAAATGA CTTCTTCTTTCCAGAAAGAAGTCATTCGACTCCTCGTCAGTACTGGACTTGATTGGGTGAACGAACATGTAGTGGATGGATACACTTTGGATGCTGTTGT GTTGGATAAAAAATTAGCACTTGAGGTTGATGGACCCACTCATTTCTCAAGGAACACAGGAAAGCCTTTGGGGCATACGATGTTGAAACGACGATACATT GGTGCAGCAGGCTGGAATTTGGTTTCGTTGTCCCATCAAGAGTGGGAAGAACTTCAAGGCAGTTTCGAACAGGTAGAATATCTGAGGCAGATTCTGGGAA GCCACCTAGGCGTCTGA
AA sequence Show only first row Show all	>Lus10033769 pacid=23172724 polypeptide=Lus10033769 locus=Lus10033769.g ID=Lus10033769.BGIv1.0 annot-version=v1.0 MDGLLTAFPHRSCLQSLIFNHTLVSNAPPIRLGTVSLNQRLQLVGVERMKCMNSPATDTSGVVDEEGVKDVEDWELEFLGKAGSSGFRESSTKRKTGKGS TLLEGEDEMDWCLRARKVALKSIETRGLSYKMEQLVSGNTKKKNKTKKKLVTKSKKKKNEQEFEEDLDLDEVERILDDDTSDLQRKVSMMGDGMFEEQKE KAMEEFVKKLSQFSGPSDRKKEVNMNRAIVEAQTAEEVMEVTADVIMAGGGGGLTPSPLSPLNIATALHRIAKNMEKVSMMKTHRLAFARQREMSMLVGI AMTALPECSAQGISNISWALSKIGGELLYMSEMDRVAEVALTRVNEFNSQNVANVAGAFASMQHSAPHLFSELGKRAGEIIHTFQEQELAQVLWAFAALF EPADPLLNSLDIVFKEANQFEWSDVPASDKNLEVVEVPLLRLNRDQLGNIAWSYAVLGQLDHTFFANVWRTMSRFEDQRISEQYREDMMFASQVRLVNQC LKLEYPHLEMSLGNDVEERICRAGRSKRFNQKMTSSFQKEVIRLLVSTGLDWVNEHVVDGYTLDAVVLDKKLALEVDGPTHFSRNTGKPLGHTMLKRRYI GAAGWNLVSLSHQEWEELQGSFEQVEYLRQILGSHLGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31890		ATRAP	RAP (.1)		Lus10033769 [exp]	0	1
AT4G37380			Tetratricopeptide repeat (TPR)...		Lus10000110 [exp]	3.2	0.9293
AT5G45930		CHLI-2, CHLI2	magnesium chelatase i2 (.1)		Lus10015302 [exp]	4.6	0.9329
AT5G22510		INV-E, At-A/N-I...	Arabidopsis alkaline/neutral i...		Lus10019532 [exp]	6.5	0.8851
AT3G56940		CRD1, CHL27, AC...	COPPER RESPONSE DEFECT 1, dica...		Lus10035398 [exp]	7.5	0.9190
AT5G21222			protein kinase family protein ...		Lus10023650 [exp]	7.7	0.9174
AT3G61870			unknown protein		Lus10012617 [exp]	8.3	0.9208
AT4G00370		PHT4;4, ANTR2	anion transporter 2, Major fac...		Lus10014769 [exp]	10.2	0.8947
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10037012 [exp]	12.6	0.9135
AT3G56940		CRD1, CHL27, AC...	COPPER RESPONSE DEFECT 1, dica...		Lus10031000 [exp]	12.7	0.9124
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Lus10019493 [exp]	13.2	0.9153

Compare expression of checked genes

Lus10033769 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.