Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44910 568 / 0 ATPRP40A pre-mRNA-processing protein 40A (.1.2) AT3G19670 540 / 9e-177 ATPRP40B pre-mRNA-processing protein 40B (.1) AT3G19840 59 / 1e-08 ATPRP40C pre-mRNA-processing protein 40C (.1) AT2G41020 49 / 1e-05 WW domain-containing protein (.1.2) AT4G16280 46 / 0.0001 FCA RNA binding;abscisic acid binding (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006142 [exp] 1441 / 0 AT3G19670 648 / 0.0 pre-mRNA-processing protein 40B (.1) Lus10018659 [exp] 405 / 5e-126 AT1G44910 834 / 0.0 pre-mRNA-processing protein 40A (.1.2) Lus10007723 [exp] 402 / 5e-124 AT1G44910 828 / 0.0 pre-mRNA-processing protein 40A (.1.2) Lus10030562 [exp] 86 / 7e-17 AT3G19840 671 / 0.0 pre-mRNA-processing protein 40C (.1) Lus10012908 [exp] 74 / 3e-13 AT3G19840 673 / 0.0 pre-mRNA-processing protein 40C (.1) Lus10006305 [exp] 49 / 4e-06 AT4G16280 68 / 1e-13 RNA binding;abscisic acid binding (.1.2.3.4) Lus10037787 [exp] 47 / 0.0001 AT4G16280 391 / 5e-127 RNA binding;abscisic acid binding (.1.2.3.4) Lus10029574 [exp] 46 / 0.0002 AT4G16280 467 / 1e-155 RNA binding;abscisic acid binding (.1.2.3.4) Lus10017070 [exp] 45 / 0.0003 AT4G16280 376 / 2e-121 RNA binding;abscisic acid binding (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G085400 [exp] 842 / 0 AT1G44910 651 / 0.0 pre-mRNA-processing protein 40A (.1.2) Potri.001G289800 [exp] 824 / 0 AT1G44910 667 / 0.0 pre-mRNA-processing protein 40A (.1.2) Potri.014G013100 [exp] 629 / 0 AT1G44910 808 / 0.0 pre-mRNA-processing protein 40A (.1.2) Potri.010G170400 [exp] 97 / 2e-20 AT3G19840 631 / 0.0 pre-mRNA-processing protein 40C (.1) Potri.010G147900 [exp] 54 / 5e-07 AT4G16280 338 / 3e-107 RNA binding;abscisic acid binding (.1.2.3.4) Potri.002G192900 [exp] 49 / 2e-05 AT2G47310 273 / 1e-85 flowering time control protein-related / FCA gamma-related (.1) Potri.006G032200 [exp] 45 / 0.0002 AT2G41020 410 / 2e-140 WW domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0680 [flax] [poplar] WW PF00397 [flax] [poplar] WW WW domain CL0584 [flax] [poplar] FF PF01846 [flax] [poplar] FF FF domain
Representative CDS sequence Show only first row Show all	>Lus10033770 pacid=23172868 polypeptide=Lus10033770 locus=Lus10033770.g ID=Lus10033770.BGIv1.0 annot-version=v1.0 ATGCAATTCCGATCTGTTGCTCCACCAGTACAACACCAGTCTCAGCAGTTCATTTCTGTGCCTTCTCAACATTTTCAACCTGTTGGCCGTGGTGGTCCGG TGATGAATCCTGGGATGCTTTCTCAACCTCAGCAAGTCCAGTTCCCACAAGCTATGCAGCATATTGCTGTAATGCCTAGCCAACCTGGCCATGGTCCTCC ATCTCAGCCAATTTCACTGTCAAATAATCAACCAAATAGGCATGTTGTTCCTGGGACATCACTGCCTCCACCGCCTCATCAAAATCCAACTGGTTACCCT TCTGGTTTAGGTGGCCCATCAATGTACAATTTTGGATCTGTTCCATACCCTCCTCCACCAGTGAATTATAATGCTGTAACCCAGTTTCACCCTATTGCTC AAGTGCCAGTACCAAGTGCTCCAGCTCCATCTCAGCCGGCATTATCTTCAGTGAACTTGGGCCCTACTTCTGCTGATCCGTTGCATCGCAGCGGTGAACA ACTGTCAGTTACCCATCCTAATGTTCTGAAAACAAGTATAGACTCTAAGCCTCCTGAAGTTGTCTCGACAGATTGGATAGAGCATGTATCTGGTGCTACT GGAAGGAGATATTATTACAACAAGAAAACAAGAATATCCAGTTGGGAAAAACCGTTTGAATTGATGACTCCAATTGAGAGGGCAGATTCATCTACTGACT GGCAGGAAGTCACTAGTCCAGATGGAAGAAAGTATTACCACAACAAGGTGACCAAGCAGTCGAAGTGGGAGATCCCCGAGGAATTGAAGTTGGCTCGCCA GCAAATAGAAAAAGCCCATACCGTTGAGATGCCAGAAGAAAGTTTTCATGTCCCTGCTTCTGACCTCCACGGATCAGACCCTCCATTATCCTTGGTCGAG GATGCACCATCTAGTCCTGTCCCTGTTAAACCTGTTGCTGCTGTTGTTGTGCAATCTCAGACTCCTGAATCATCTCCTTTAGCTGCTATGACTTCTTCTG TAGCAACGGATATTGATGAACAAAAACCAGCTTTGCCTGAAGGCGCTGCTGCAGTCGCTGCCACATTGGTTGATCCTGAACCAATATCCATCATTAACTC CGCCAACAGTTCACCTGGAGATCCTCATATTGAAGAACAAGTTTCTATGCTAGATCAAGAGGACTCAGGAAAAGACATGCAGACAAGTGAGAAACTCAAC AATGTTACCGTTGAAGATAAAACTGCTACAAGAGACCCCTTGACTTATGCTGACAAGCAGGAGGCAAAAGATTTATTTAAAACACTTTTGGAGTCCGCCA ATGTTGGGCTAGACTGGACCTGGGAGCAGGCCATGCGTGTAATAGTTACCGATAAAAGATATGGTGCTCTCAAAACACTTGGAGAAAGGAAGCAAACATT CAATGAGTATTTGGCTGAAAGGAGAAAACAAGAAGTTGAAGAGAGGAAAACTAAGCAGAAGAAAGCACGAGATGATTTCAGGAATATGTTAGAAGAGTCG AGTGATATAACTTCAGGAACCCGATGGAGCAAAGTAATGCCTTTGTTTGAAAATGATGAACGATACTACGCGGTTGAAAGAGAAAGAGATCGAAAGGATC TGTTCGATACATATTTGAAGGAGCTAACAGACAAGGAACGCTCAAGAGCTCATGAGGAGCGTAAGCAAAATGTTATGGAGTACATGGAGTTTCTACAGTC CTGTGATTTTATCAAGGCAAACACCCAATGGCGGAAAGTTCAGGAACGGTTAGAGGCTGATGAAAGATGCTCACGACTCGAAAAAATTGATAGGCTGGAG ATATTTCAGGATTACTTGCGTGATTTGGAGAAAGAAGAAGAGGAGCAAAGAAAGATACAGAAGGAGGAAATGAGAAAGGCGGAGCGTAAAAATCGTGACG AGTTCCGGAAACTGTTGGAAGAACATGTAGCTGCTGGTACCATCACAACCAAAACTCACTGGCGTGATTACTACATGAAGGTTAAAGATCTACCTGCTTA TTTAGCTATTGTATCAAATGCATCTGGCTTAACTGCTAAAGAATTGTTTGAAGATGTTGCTCAGGAGCTGGACAAGCAGTATCATGAGGACAAAACTCGT GTAAAAGATGCTGTGAAGTTTAAAAAGGTTCTTTTGGATTCAACATGGACCCTAGAAGATTTTAAAGCTGCTATTGAACAGAATGTTGGCTCCCCTCCTG TATCCGATGCGAATTTACAGATGATATATGAAGAATTGCTTGAAAGAGCTAAAGAAAAGGAGGAGAAAGAGGCGAAAAGGCGCAAGCGTCTTGCAGATGA TTTCCTTAATCTGTTGCATTCCATTAAGGAGATAAGTGGATCTTCAAAGTGGGAAAATTTCAAAGAGCAAGTTGAGGATAGCAGAGAGTTCAGTTCAATT GGCGAAGAGAGCATCTGTAAGGAGATTTTTGAGGAATACGCAAGTCAACTGAAAGAACAGGAAAAGGAGAACGAACGCAGAAGAAAAGAGGATAAGGCTA GAAAGGAACGGGAGAGAGACGAAAGAGAGAGAAGAAAGTCGAAACACAGAAGGGAGAGAGATAGAGGTCAGGAGAGGGAGAAGGATCACCCAAAGGAGGA AGTGGAGAGCGAGAGTGGTGATCATTTTAATGAAACCCATGGCGATGGAAGAAGATTGAGCAAAGACAGCAGCAGTAGCCAGAGACATAGGAAGAGGCAT CATCAACATGGCGGAGAATTAGATGATCATGACGAAAAAGGCAGTCACAGACCCAGTAGCGACCATAAAAGAGGAAGATGGCACACATCTACCCCGGAGT CTGAGAATGAAAGCAGGCATAGAAGGCAGAAGAGAGATCATCATAATGGTTCTTCTCGTAGGGAAGGTAATCAGGAGGAGCTTGAAGATGGGGAGTTCGG CGAGGAAGGGGAAGCTCGTTAG
AA sequence Show only first row Show all	>Lus10033770 pacid=23172868 polypeptide=Lus10033770 locus=Lus10033770.g ID=Lus10033770.BGIv1.0 annot-version=v1.0 MQFRSVAPPVQHQSQQFISVPSQHFQPVGRGGPVMNPGMLSQPQQVQFPQAMQHIAVMPSQPGHGPPSQPISLSNNQPNRHVVPGTSLPPPPHQNPTGYP SGLGGPSMYNFGSVPYPPPPVNYNAVTQFHPIAQVPVPSAPAPSQPALSSVNLGPTSADPLHRSGEQLSVTHPNVLKTSIDSKPPEVVSTDWIEHVSGAT GRRYYYNKKTRISSWEKPFELMTPIERADSSTDWQEVTSPDGRKYYHNKVTKQSKWEIPEELKLARQQIEKAHTVEMPEESFHVPASDLHGSDPPLSLVE DAPSSPVPVKPVAAVVVQSQTPESSPLAAMTSSVATDIDEQKPALPEGAAAVAATLVDPEPISIINSANSSPGDPHIEEQVSMLDQEDSGKDMQTSEKLN NVTVEDKTATRDPLTYADKQEAKDLFKTLLESANVGLDWTWEQAMRVIVTDKRYGALKTLGERKQTFNEYLAERRKQEVEERKTKQKKARDDFRNMLEES SDITSGTRWSKVMPLFENDERYYAVERERDRKDLFDTYLKELTDKERSRAHEERKQNVMEYMEFLQSCDFIKANTQWRKVQERLEADERCSRLEKIDRLE IFQDYLRDLEKEEEEQRKIQKEEMRKAERKNRDEFRKLLEEHVAAGTITTKTHWRDYYMKVKDLPAYLAIVSNASGLTAKELFEDVAQELDKQYHEDKTR VKDAVKFKKVLLDSTWTLEDFKAAIEQNVGSPPVSDANLQMIYEELLERAKEKEEKEAKRRKRLADDFLNLLHSIKEISGSSKWENFKEQVEDSREFSSI GEESICKEIFEEYASQLKEQEKENERRRKEDKARKERERDERERRKSKHRRERDRGQEREKDHPKEEVESESGDHFNETHGDGRRLSKDSSSSQRHRKRH HQHGGELDDHDEKGSHRPSSDHKRGRWHTSTPESENESRHRRQKRDHHNGSSRREGNQEELEDGEFGEEGEAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Lus10033770 [exp]	0	1
AT5G02520			unknown protein		Lus10025814 [exp]	1.7	0.9146
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Lus10039845 [exp]	2.0	0.9227
AT5G58160			actin binding (.1)		Lus10035830 [exp]	2.4	0.9284
AT5G11010			Pre-mRNA cleavage complex II p...		Lus10033124 [exp]	2.6	0.9054
AT5G07950			unknown protein		Lus10021622 [exp]	3.2	0.9104
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Lus10035972 [exp]	7.2	0.8855
AT5G06160		ATO	ATROPOS, splicing factor-relat...		Lus10000360 [exp]	13.3	0.8918
AT5G58160			actin binding (.1)		Lus10036612 [exp]	15.0	0.8922
AT4G23700		ATCHX17	cation/H+ exchanger 17, cation...		Lus10028747 [exp]	23.0	0.8525
AT2G01350		QPT	quinolinate phoshoribosyltrans...		Lus10018780 [exp]	25.8	0.9142

Compare expression of checked genes

Lus10033770 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.