Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49975 127 / 1e-38 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006137 [exp] 198 / 1e-66 AT1G49975 155 / 6e-50 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G292000 [exp] 136 / 2e-42 AT1G49975 154 / 2e-49 unknown protein Potri.009G086400 [exp] 54 / 3e-10 AT1G49975 82 / 1e-21 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05479 [flax] [poplar] PsaN Photosystem I reaction centre subunit N (PSAN or PSI-N)
Representative CDS sequence Show only first row Show all	>Lus10033771 pacid=23172809 polypeptide=Lus10033771 locus=Lus10033771.g ID=Lus10033771.BGIv1.0 annot-version=v1.0 ATGAGTACTAGCAGTTCACTTGTTTCCCAAAGCGTTTTGATGGCATTTACTGCCACTGTCAACAAATTTGCTTCTTCAAACGTCCACGCAATCCCCAGAG CTCAACCGGCCAGAAGAGATTCCTCCTCATCTTCATCGGCGGCCGCTGTCGGAAGAAGAGGAGTCATGTTCTCCGCCATTGTTGGGGCTTATCCTGCTGC TGCTGAATCCAAAACTGACCTTCTCAACAAATATTTGAAGAAATCAGAGGACAACAAGGCCAAAAATGACAAGGAGAGATTGGATAGCTACTACAAGAGG AACTACAAGGATTACTTTGATTTTGTGGAAGGGTCACTGAGAGGCAAGAAGGAGGAGGAGCTTTCTGACTCAGAAAAAGGAATTATCGAGTGGCTCAAGT CCAACAAATAA
AA sequence Show only first row Show all	>Lus10033771 pacid=23172809 polypeptide=Lus10033771 locus=Lus10033771.g ID=Lus10033771.BGIv1.0 annot-version=v1.0 MSTSSSLVSQSVLMAFTATVNKFASSNVHAIPRAQPARRDSSSSSSAAAVGRRGVMFSAIVGAYPAAAESKTDLLNKYLKKSEDNKAKNDKERLDSYYKR NYKDYFDFVEGSLRGKKEEELSDSEKGIIEWLKSNK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49975			unknown protein		Lus10033771 [exp]	0	1
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10040736 [exp]	1.0	0.9608
AT5G44520			NagB/RpiA/CoA transferase-like...		Lus10008059 [exp]	3.2	0.9578
AT4G31115			Protein of unknown function (D...		Lus10026864 [exp]	3.9	0.9538
AT4G19100		PAM68	photosynthesis affected mutant...		Lus10012152 [exp]	4.5	0.9538
AT4G15510			Photosystem II reaction center...		Lus10000614 [exp]	5.0	0.9449
AT1G49975			unknown protein		Lus10006137 [exp]	5.7	0.9425
AT4G39710		PnsL4, FKBP16-2	Photosynthetic NDH subcomplex...		Lus10000197 [exp]	6.0	0.9400
AT3G26900		ATSKL1	Arabidopsis thaliana shikimate...		Lus10035171 [exp]	6.3	0.9389
AT4G30845			unknown protein		Lus10002320 [exp]	7.0	0.9092
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Lus10043143 [exp]	9.8	0.9427

Compare expression of checked genes

Lus10033771 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.