Plant FIBer expression Database

Lus10033772 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G33800 47 / 2e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006135
[exp]
200 / 3e-65 AT4G33800 54 / 3e-09 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G292100
[exp]
71 / 4e-15 AT4G33800 85 / 1e-20 unknown protein
Potri.009G086600
[exp]
61 / 3e-11 AT4G33800 77 / 1e-17 unknown protein
Potri.002G117600
[exp]
55 / 2e-09 AT4G33800 72 / 3e-16 unknown protein
Potri.014G015000
[exp]
50 / 1e-07 AT4G33800 63 / 2e-12 unknown protein
PFAM info
Representative CDS sequence
>Lus10033772 pacid=23172822 polypeptide=Lus10033772 locus=Lus10033772.g ID=Lus10033772.BGIv1.0 annot-version=v1.0
ATGATGAATTCATCAGAAGAATGCAGCAGTGGGTGTGAGTCTGGGTGGACTCTTTACCTGGAACACTCTTTTCTCCACGGCAAGCAACGACAGATTGACG
ATGAGTATCAGGTGGAGGGAGAAGAAACTGATATTGAGGATTTGTCAATGGTTTCCGATGCTTCCTCTGGCCCTCCCCTGTATTCTCATGAGGATGATGA
TAATAATCACTACTCGTCGAGGGAAACGGATTCATCCAGTGGTTTTGAGAAAAGCAAGAAACACCAGATGAAGAATAAGAAGAATAAGAATAAGAAGAAG
AAAGTAGTTGAGGAACAGAGACAGATTCATCCAAATCAAGTTCGGGGTTGTAATTTCTTGGATGATACTGCTAGCTCCCCTGCATTCAACCACACCAGCA
GCATTCCCCATGCCATGGATTATTCTCAAGCTTTCTCTGCTACCCATTTTCAGCAGAGGGGATCTGGAGAATATGATGAGCAATTCGGATATCAGAGGGG
ATCTGGAGAATATGATGAGCAATTCGGATATGTACAAACTTCATTATCAGGAAATTATCTTCAAAATCACCAGTTAAGTCTGATCAGCTTCATTAGTATC
ACTATCTTTTGCATTGGGAGGAAAGGAAACTAA
AA sequence
>Lus10033772 pacid=23172822 polypeptide=Lus10033772 locus=Lus10033772.g ID=Lus10033772.BGIv1.0 annot-version=v1.0
MMNSSEECSSGCESGWTLYLEHSFLHGKQRQIDDEYQVEGEETDIEDLSMVSDASSGPPLYSHEDDDNNHYSSRETDSSSGFEKSKKHQMKNKKNKNKKK
KVVEEQRQIHPNQVRGCNFLDDTASSPAFNHTSSIPHAMDYSQAFSATHFQQRGSGEYDEQFGYQRGSGEYDEQFGYVQTSLSGNYLQNHQLSLISFISI
TIFCIGRKGN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G33800 unknown protein Lus10033772
[exp]
0 1
AT4G31820 MAB4, ENP, NPY1 NAKED PINS IN YUC MUTANTS 1, M... Lus10042414
[exp]
9.2 0.7402
AT1G79050 recA DNA recombination family ... Lus10042462
[exp]
11.0 0.7311
AT5G35520 MIS12, ATMIS12 MIS12 HOMOLOGUE, ARABIDOPSIS M... Lus10009016
[exp]
12.3 0.7662
AT5G07810 SNF2 domain-containing protein... Lus10003469
[exp]
12.7 0.7447
AT5G11200 DEAD/DEAH box RNA helicase fam... Lus10002905
[exp]
16.3 0.7522
AT3G13226 regulatory protein RecX family... Lus10032955
[exp]
18.3 0.7407
AT3G01580 Tetratricopeptide repeat (TPR)... Lus10034497
[exp]
19.0 0.7083
AT5G17430 AP2_ERF BBM BABY BOOM, Integrase-type DNA-... Lus10001185
[exp]
25.1 0.7388
AT1G61000 unknown protein Lus10012690
[exp]
29.4 0.7413
AT2G36620 RPL24A ribosomal protein L24 (.1) Lus10032198
[exp]
31.6 0.7263

Lus10033772 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.