Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55830 85 / 1e-17 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 84 / 1e-17 RLK receptor lectin kinase (.1) AT4G02410 83 / 3e-17 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 80 / 3e-16 Concanavalin A-like lectin protein kinase family protein (.1) AT5G10530 79 / 5e-16 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 75 / 2e-14 Concanavalin A-like lectin protein kinase family protein (.1) AT5G06740 74 / 2e-14 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70110 74 / 3e-14 Concanavalin A-like lectin protein kinase family protein (.1) AT5G03140 74 / 5e-14 Concanavalin A-like lectin protein kinase family protein (.1) AT4G04960 73 / 6e-14 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014652 [exp] 494 / 2e-176 AT5G10530 92 / 4e-20 Concanavalin A-like lectin protein kinase family protein (.1) Lus10014651 [exp] 482 / 9e-172 AT2G37710 96 / 3e-21 receptor lectin kinase (.1) Lus10014649 [exp] 428 / 1e-150 AT5G10530 91 / 8e-20 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033778 [exp] 398 / 6e-139 AT5G10530 92 / 4e-20 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033779 [exp] 390 / 1e-135 AT5G10530 97 / 7e-22 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033781 [exp] 314 / 7e-107 AT5G10530 99 / 4e-23 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033782 [exp] 332 / 2e-105 AT5G10530 351 / 2e-108 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033777 [exp] 181 / 5e-57 AT4G02410 49 / 9e-08 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033783 [exp] 141 / 4e-37 AT5G10530 468 / 2e-156 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G283212 [exp] 142 / 2e-37 AT5G10530 385 / 3e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G262866 [exp] 137 / 9e-36 AT5G10530 384 / 1e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283400 [exp] 135 / 4e-35 AT5G10530 494 / 6e-167 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004200 [exp] 135 / 6e-35 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283866 [exp] 135 / 7e-35 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283208 [exp] 135 / 7e-35 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283200 [exp] 130 / 2e-33 AT5G10530 382 / 8e-125 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283204 [exp] 128 / 1e-32 AT5G10530 472 / 3e-159 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283700 [exp] 127 / 2e-32 AT5G10530 497 / 7e-168 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G284200 [exp] 121 / 3e-30 AT5G10530 441 / 8e-148 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10033776 pacid=23172741 polypeptide=Lus10033776 locus=Lus10033776.g ID=Lus10033776.BGIv1.0 annot-version=v1.0 ATGGAAGTGCTAACAAGCACGATCATCACCGTGTTAACTACTTGGTCCCTCTTGATCCCAACATGCCATACGGCGCCGTTGTCGTTCAGCTACACCAACT TCGACAAATGCAGCAACAACTCCATCAAAGTCTTCGAATCTGCAGCTTGCGGAGCTTCAGGGGTCCAACTCACCAGCAACGACTTCTACACATACGGCCA GGCACATTACTCAAAACCAATGCGCCTATGGGACGCCTCCACGGGCAACCTTACCAGTTTCAACACCAATTTCACCTTCTCAATGGACAACTACAACAGC AGCCATACCTGTGACGGCCTAGCCTTCTTCATCGCCTCACTCAATTACACCACTCCCGCCGCCAACGCATCAGATGGCCGTTTGGGGCTTGTAGACAGTA ACCACGAGTTGAATTCCACGGGGAATCCGTTCGTGGCGGTCGAGTTCGACACCTACTACAACTCCAAATGGGACACATTGAGGGATAACCACGTCGGAAT TGATGTCAGTTCCCTAAAGGCCGTTGCCAGCAAGAGATGGCGGAGTTACGCGAACGGGACGACTATGTCGGCCAGCGTGTCTTACAAAGGCAAAAACCTC TGCGTAGAGTTCACGGGGATCACGGAAGGTGGCCAGAAACAAACGGAGCTGGTGGACGTTCCTGGGGATACACTATGCTACGAAATTGATTTGAAGGATT ATTTGACGGAATGGGCTGTGTTCGGCTTCTCTGCTTCAACGGCGTTTAGGTACCAATCTCACACGCTCAAGAAGTGGTCGTTTTACTCCGATTTAGACTC CGAGGGTGGTCCCAGCATAGCCAAAACCCAAACCCGAAAACAAGAAGGCAAGAAATCTAACATGAGCTTAATTATTGGATTGCCAGTAATTGGTGTTCTT GCAATACTAATATTGGCCGGTTTGGTAATTTGGACTCGCTCCGGTAAAAAGCCAGTATCCGACCTACGTTCTGATTCGGGATCTCGATCCCCAGACGGTT TCCTCTCCACCAGAAAATATCATTCGTCGACAGTGAATGGTACTAGATAG
AA sequence Show only first row Show all	>Lus10033776 pacid=23172741 polypeptide=Lus10033776 locus=Lus10033776.g ID=Lus10033776.BGIv1.0 annot-version=v1.0 MEVLTSTIITVLTTWSLLIPTCHTAPLSFSYTNFDKCSNNSIKVFESAACGASGVQLTSNDFYTYGQAHYSKPMRLWDASTGNLTSFNTNFTFSMDNYNS SHTCDGLAFFIASLNYTTPAANASDGRLGLVDSNHELNSTGNPFVAVEFDTYYNSKWDTLRDNHVGIDVSSLKAVASKRWRSYANGTTMSASVSYKGKNL CVEFTGITEGGQKQTELVDVPGDTLCYEIDLKDYLTEWAVFGFSASTAFRYQSHTLKKWSFYSDLDSEGGPSIAKTQTRKQEGKKSNMSLIIGLPVIGVL AILILAGLVIWTRSGKKPVSDLRSDSGSRSPDGFLSTRKYHSSTVNGTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37710		RLK	receptor lectin kinase (.1)		Lus10033776 [exp]	0	1
AT5G13500			unknown protein		Lus10009691 [exp]	1.0	0.9405
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Lus10025681 [exp]	2.4	0.9292
AT1G79690		ATNUDT3	nudix hydrolase homolog 3 (.1)		Lus10002329 [exp]	10.5	0.9004
					Lus10034460 [exp]	11.4	0.8858
AT3G13235		DDI1	DNA-damage inducible 1, ubiqui...		Lus10007088 [exp]	13.6	0.9159
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10030597 [exp]	14.8	0.8899
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10030599 [exp]	16.7	0.8910
AT1G30110		ATNUDX25	nudix hydrolase homolog 25 (.1...		Lus10003714 [exp]	18.7	0.8990
AT1G07630		PLL5	pol-like 5 (.1)		Lus10024397 [exp]	23.1	0.8922
AT3G60600		(AT)VAP, (AT)VA...	VAMP/SYNAPTOBREVIN-ASSOCIATED ...		Lus10007463 [exp]	23.6	0.8859

Compare expression of checked genes

Lus10033776 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.