Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10530 73 / 6e-14 Concanavalin A-like lectin protein kinase family protein (.1) AT5G06740 66 / 2e-11 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 65 / 3e-11 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70110 63 / 1e-10 Concanavalin A-like lectin protein kinase family protein (.1) AT5G65600 61 / 7e-10 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 60 / 1e-09 Concanavalin A-like lectin protein kinase family protein (.1) AT4G04960 57 / 9e-09 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 57 / 1e-08 RLK receptor lectin kinase (.1) AT3G53380 54 / 7e-08 Concanavalin A-like lectin protein kinase family protein (.1) AT5G60270 50 / 1e-06 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033779 [exp] 524 / 0 AT5G10530 97 / 7e-22 Concanavalin A-like lectin protein kinase family protein (.1) Lus10014649 [exp] 473 / 3e-168 AT5G10530 91 / 8e-20 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033776 [exp] 376 / 3e-130 AT2G37710 91 / 8e-20 receptor lectin kinase (.1) Lus10014652 [exp] 372 / 4e-128 AT5G10530 92 / 4e-20 Concanavalin A-like lectin protein kinase family protein (.1) Lus10014651 [exp] 363 / 1e-124 AT2G37710 96 / 3e-21 receptor lectin kinase (.1) Lus10033781 [exp] 289 / 6e-97 AT5G10530 99 / 4e-23 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033782 [exp] 288 / 6e-89 AT5G10530 351 / 2e-108 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033777 [exp] 158 / 7e-48 AT4G02410 49 / 9e-08 Concanavalin A-like lectin protein kinase family protein (.1) Lus10014650 [exp] 125 / 2e-34 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G283212 [exp] 122 / 2e-30 AT5G10530 385 / 3e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283866 [exp] 122 / 2e-30 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283208 [exp] 122 / 2e-30 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283400 [exp] 114 / 1e-27 AT5G10530 494 / 6e-167 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G262866 [exp] 113 / 2e-27 AT5G10530 384 / 1e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283700 [exp] 109 / 4e-26 AT5G10530 497 / 7e-168 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004200 [exp] 105 / 1e-24 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283200 [exp] 104 / 2e-24 AT5G10530 382 / 8e-125 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283204 [exp] 102 / 1e-23 AT5G10530 472 / 3e-159 Concanavalin A-like lectin protein kinase family protein (.1) Potri.003G094700 [exp] 96 / 1e-21 AT5G10530 764 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10033778 pacid=23172736 polypeptide=Lus10033778 locus=Lus10033778.g ID=Lus10033778.BGIv1.0 annot-version=v1.0 ATGATCGTCAGTATCATCACCGTTTTTATATGGTCCCTCGTCATCTCAATATGTGAAACGGCTCCGTTGTCCTTCAACTACTCCAACTTCGACAAGTGCG GCGACTCCCTCAAATTCTTTGAAACCGCAGCTTGCGGGCATTCAGGGGTCCAACTCACCAAATCCCACTACTTCCAAACAGGGCAGGTACATTACTCCAA ACCAATGCGCCTATGGGACGCCTCCACTGGCAACCTTACCAATTTCACTACCACATTCTCCTTCTCAATGGACAACGACAACGGCACCTATTCCTGTGAC GGTATAGCCTTCTTCCTCGCCTCCATCAATTACACCACTCCCACCGTCAATGCATCACATGGCCTTTTAGGCCTGGTAGCCACTGAGCACATGTTCAATT CGAAGGGGAATCCCTTCGTGGCGGTAGAGTTCGATACCTTTTATAACCCTTGTTGCGACAGCTTACCTCGTGGCCACGTTGGCATTAATATCAATTCCAT CAAGTCTGTTGCCAACAAGATGTGGCGGAGTTACGCGAATGGGACCATTATGTCGGCCACCGTTTCTTATAAAGCCAAGAACTTGTGTGTAGAGTTCATA GGGCGCAATGAGAAGACGGTAGCTGGCCAAGAACAAACGGTGATGGTTGATGTTCCCGGAGATACACTATGCTACGAATTGGATTTGAAGGATTATCTGA CCGAGTGGGCTTTATTCGGCTTCTCCGGATCAACGGGGCCGAGATACCAAACTCAGACGCTCAGGACGTGGTCGTTTTACTCCAAGTTAGACTCGGAAGA TGGTCCCAACCTGGGCAAATCGGAAGTTAAAAAAGAAGAAGGCAAGAAAAGCAGCAAGAGCGTGACTATTGGATTGGCGGCCGGAATAATTGGTGGTCTT GCGATACTAATATTGGCCGGTACGATAATTTATTCTCAATGCAATAAAAAACCAGCACACGACTATCGTTCTGATTCGGGATGTCGATCTCCAGACGGTT TCCTCACCACAAGAAAAGGCCGTTCGGTTACTCTAGGGAAAGTGACTAGATAG
AA sequence Show only first row Show all	>Lus10033778 pacid=23172736 polypeptide=Lus10033778 locus=Lus10033778.g ID=Lus10033778.BGIv1.0 annot-version=v1.0 MIVSIITVFIWSLVISICETAPLSFNYSNFDKCGDSLKFFETAACGHSGVQLTKSHYFQTGQVHYSKPMRLWDASTGNLTNFTTTFSFSMDNDNGTYSCD GIAFFLASINYTTPTVNASHGLLGLVATEHMFNSKGNPFVAVEFDTFYNPCCDSLPRGHVGININSIKSVANKMWRSYANGTIMSATVSYKAKNLCVEFI GRNEKTVAGQEQTVMVDVPGDTLCYELDLKDYLTEWALFGFSGSTGPRYQTQTLRTWSFYSKLDSEDGPNLGKSEVKKEEGKKSSKSVTIGLAAGIIGGL AILILAGTIIYSQCNKKPAHDYRSDSGCRSPDGFLTTRKGRSVTLGKVTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10530			Concanavalin A-like lectin pro...		Lus10033778 [exp]	0	1
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Lus10001258 [exp]	1.7	0.8582
AT4G27280			Calcium-binding EF-hand family...		Lus10039724 [exp]	3.5	0.8501
AT1G14340			RNA-binding (RRM/RBD/RNP motif...		Lus10007254 [exp]	5.7	0.8197
AT4G36550			ARM repeat superfamily protein...		Lus10028307 [exp]	6.3	0.8247
AT1G12600			UDP-N-acetylglucosamine (UAA) ...		Lus10006337 [exp]	6.9	0.8368
AT3G52420		ATOEP7	outer envelope membrane protei...		Lus10003733 [exp]	8.1	0.8403
AT5G02290		NAK	Protein kinase superfamily pro...		Lus10023794 [exp]	10.5	0.8375
AT3G16720		ATL2	TOXICOS EN LEVADURA 2 (.1)		Lus10037490 [exp]	13.0	0.8290
AT5G02290		NAK	Protein kinase superfamily pro...		Lus10003972 [exp]	13.1	0.8402
AT4G33490			Eukaryotic aspartyl protease f...		Lus10020874 [exp]	14.7	0.7876

Compare expression of checked genes

Lus10033778 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.