Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10530 81 / 6e-17 Concanavalin A-like lectin protein kinase family protein (.1) AT5G65600 69 / 5e-13 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 67 / 2e-12 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 66 / 4e-12 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 65 / 8e-12 Concanavalin A-like lectin protein kinase family protein (.1) AT5G06740 64 / 3e-11 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70110 62 / 9e-11 Concanavalin A-like lectin protein kinase family protein (.1) AT4G04960 61 / 2e-10 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 61 / 3e-10 RLK receptor lectin kinase (.1) AT4G29050 59 / 7e-10 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033782 [exp] 411 / 4e-137 AT5G10530 351 / 2e-108 Concanavalin A-like lectin protein kinase family protein (.1) Lus10014652 [exp] 314 / 6e-107 AT5G10530 92 / 4e-20 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033776 [exp] 311 / 4e-106 AT2G37710 91 / 8e-20 receptor lectin kinase (.1) Lus10014651 [exp] 308 / 3e-104 AT2G37710 96 / 3e-21 receptor lectin kinase (.1) Lus10014649 [exp] 305 / 2e-103 AT5G10530 91 / 8e-20 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033778 [exp] 287 / 3e-96 AT5G10530 92 / 4e-20 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033779 [exp] 282 / 2e-94 AT5G10530 97 / 7e-22 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033783 [exp] 151 / 2e-41 AT5G10530 468 / 2e-156 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033777 [exp] 135 / 4e-40 AT4G02410 49 / 9e-08 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G283212 [exp] 121 / 7e-31 AT5G10530 385 / 3e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004200 [exp] 117 / 1e-29 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004500 [exp] 116 / 3e-29 AT5G10530 725 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283700 [exp] 115 / 7e-29 AT5G10530 497 / 7e-168 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283866 [exp] 115 / 1e-28 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283208 [exp] 115 / 1e-28 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G262866 [exp] 114 / 2e-28 AT5G10530 384 / 1e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283200 [exp] 111 / 2e-27 AT5G10530 382 / 8e-125 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283400 [exp] 108 / 1e-26 AT5G10530 494 / 6e-167 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283204 [exp] 105 / 2e-25 AT5G10530 472 / 3e-159 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10033781 pacid=23172740 polypeptide=Lus10033781 locus=Lus10033781.g ID=Lus10033781.BGIv1.0 annot-version=v1.0 ATGATCACAACCATCATTCTCAGTACAGTTATTTCGTTCCTCTTCATCTCAATCTGCCATGCAGCGCCCTTGTACTTCAACTACACCGACTTCGACCAAT GCAACGACTCCATAAGACTCTCCGGCCATGCTTCTTGCTTAAACTCCTCCATCAATCTCACCGGCTTCGACTTTTACATAACCGGACAGGCCACGTACTC CAAACCTATGCGCCTGTGGGACGCCTCCACCGGCGAACTCGCCAACTTCACCACCACCTTCACCTTCGCAACCGACAACGATAACGGCGCCTGGACCTGC GACGGCCTAGCCTTCTTCATCGCCTCTTCCAATTACTCGAGCCCCGCCGTCAACGCATCAAGTGGCCTTTTGGGCCTGGTAGACACTAAGCATATGTTCA ATTCCAGTCAGAACCCTTTCGTCGCCGTGGAATTTGATACCTACAATAACGCCGCCTGGGACGTCTGGAACGGCTCCAGCCACGTGGGCATAGACGTAAA TTCCATACAGTCCGTCACCAGCAAGAGGTGGAAGAGTTACGCCGACGGGACGACAATGTGGGCCCAGGTCAGTTACAAAGCCGGAAAACTGTGCGTAGAA TTCACCGGTCTGATGGAGGACATGACCGACGTTCCTCGGGATACCCTCTGTTACCAGGTGGATTTGAAGGATTACCTAACCGAATGGGCTGTGTTGGGGT TTTCCGCGTCAACGGCGTTTAGATATCAGTCTCATACGATAAAGTCGTGGGCGTTTTCTTCCGATTTAGACAATGAAGCTTGTTCCACCGCAAACTATAA GAATAAGAAACCTTAA
AA sequence Show only first row Show all	>Lus10033781 pacid=23172740 polypeptide=Lus10033781 locus=Lus10033781.g ID=Lus10033781.BGIv1.0 annot-version=v1.0 MITTIILSTVISFLFISICHAAPLYFNYTDFDQCNDSIRLSGHASCLNSSINLTGFDFYITGQATYSKPMRLWDASTGELANFTTTFTFATDNDNGAWTC DGLAFFIASSNYSSPAVNASSGLLGLVDTKHMFNSSQNPFVAVEFDTYNNAAWDVWNGSSHVGIDVNSIQSVTSKRWKSYADGTTMWAQVSYKAGKLCVE FTGLMEDMTDVPRDTLCYQVDLKDYLTEWAVLGFSASTAFRYQSHTIKSWAFSSDLDNEACSTANYKNKKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10530			Concanavalin A-like lectin pro...		Lus10033781 [exp]	0	1
AT4G18380			F-box family protein (.1.2)		Lus10040978 [exp]	1.7	0.9687
AT1G18140		LAC1, ATLAC1	laccase 1 (.1)		Lus10040936 [exp]	3.2	0.9704
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10021257 [exp]	4.1	0.9742
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10020493 [exp]	4.1	0.9561
AT4G35030			Protein kinase superfamily pro...		Lus10017273 [exp]	5.0	0.9653
AT1G20030			Pathogenesis-related thaumatin...		Lus10004410 [exp]	7.1	0.9535
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Lus10021196 [exp]	10.7	0.9439
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10037585 [exp]	12.2	0.9592
AT1G23820		SPDS1	spermidine synthase 1 (.1.2)		Lus10039416 [exp]	14.8	0.9442
					Lus10016839 [exp]	15.0	0.9656

Compare expression of checked genes

Lus10033781 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.