Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10530 327 / 3e-99 Concanavalin A-like lectin protein kinase family protein (.1) AT5G65600 313 / 7e-94 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 304 / 1e-90 Concanavalin A-like lectin protein kinase family protein (.1) AT5G06740 281 / 1e-82 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 276 / 1e-80 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 273 / 2e-79 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 253 / 3e-72 RLK receptor lectin kinase (.1) AT4G02420 251 / 9e-72 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 251 / 2e-71 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 251 / 2e-71 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033783 [exp] 464 / 2e-150 AT5G10530 468 / 2e-156 Concanavalin A-like lectin protein kinase family protein (.1) Lus10014648 [exp] 462 / 3e-149 AT5G10530 462 / 4e-154 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033781 [exp] 407 / 6e-135 AT5G10530 99 / 4e-23 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020452 [exp] 404 / 1e-127 AT5G10530 510 / 2e-173 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020446 [exp] 391 / 1e-122 AT5G10530 516 / 2e-175 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007077 [exp] 394 / 8e-122 AT5G10530 511 / 4e-171 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004277 [exp] 359 / 2e-111 AT5G10530 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10014651 [exp] 344 / 2e-109 AT2G37710 96 / 3e-21 receptor lectin kinase (.1) Lus10029555 [exp] 353 / 8e-109 AT5G10530 687 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G283866 [exp] 394 / 7e-124 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283208 [exp] 394 / 7e-124 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G262866 [exp] 389 / 3e-122 AT5G10530 384 / 1e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283200 [exp] 385 / 9e-122 AT5G10530 382 / 8e-125 Concanavalin A-like lectin protein kinase family protein (.1) Potri.003G094700 [exp] 384 / 2e-120 AT5G10530 764 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283700 [exp] 383 / 7e-120 AT5G10530 497 / 7e-168 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283204 [exp] 381 / 9e-120 AT5G10530 472 / 3e-159 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283400 [exp] 383 / 1e-119 AT5G10530 494 / 6e-167 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004200 [exp] 376 / 3e-117 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004500 [exp] 369 / 3e-115 AT5G10530 725 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10033782 pacid=23172846 polypeptide=Lus10033782 locus=Lus10033782.g ID=Lus10033782.BGIv1.0 annot-version=v1.0 ATGAAGATCCCAGCGGAGGACATCCTCCGAAATGTATATTATCGACATCCCATGGTGGCCGATGATAGTATTGTTTGGTACCGTCTCCGGCCATGCACTG ATGAAGAGTCTTGGAAAGCTATTTACTACTTGGTAACAACTTTCCCGGCGTGCAACAATCTGGAGCTGTATTTCGAGTTTGACGGTGCAATCGACGGAGT TGGTGGCTCTGGTGGTCAATCATCAAAGATTGGAAGTCCAGTATGCGAGCACCCATCTGATCGATCGTTGACTTTCCTTGCTGTAACTTACCTGTTTCCC CGGAATCCAACTCCTTCCAACATGCATATTCATATTCTACTCATAAATTGCGCTTCTTCTTCTTCTTCTCATTCGTCTGTGATGAAAAGAGAGAAGAATC TTGAGAAAATGGCAACAACCATGATCACCATCATTATCAGCACAGTTATTTCATCCCTCTGCATCTCAACATGCCATTCGGCGCCGTTGTCCTTCAACTA CACCAACTTCGAGCAATGCAGCGACTCCATAAGACTCTCCGGCCGTGCTTCTTGCCTAAACTTCATCAATCTAACCAGCTCCGACTTTTACATCACCGGA CAGGCCAAGTACTCGAAACCCATGCGCCTGTGGGACGCCTCCACCGGCGACCTCGCCAACTTCACCACCACCTTCACCTTCGCTACCGACAACGACAACG GCACCTGGACCTGCGACGGCTTAGCCTTCTTCATCGCCTCTTCCAATTATTCCACTCCCGCCGTCAACGCATCAGACGGACTTTTCGGCCTGGTAGACAA TAAGCACATGTACAATTCCACTCAGAACCCCTTCGTCGCCGTGGAATTCGATACCTACAATAACCCCGACTGGGACGTCTGGAACGGTTTCAGCCATGTG GGCATAGACGTAAATTCCATACAGTCCGTCACCAGCAAGAGGTGGAGGAGTTACGCCAACGGGACCACAATGTTGGCCCAGGTCAGTTACAGAGCCAAAA AGCTCTGCGTGGAGTTCACCGGTCTGACGGAAGACATGACGGAGGTTCCTCGGGATACCCTCTGCTACGAGGTGGATTTGAAGGATTACTTATCGGAATG GGCTGTGTTGGGCTTCTCGGCGTCGACGGCGTTTAGGTACCAGTCTCACACGATTAAGTCGTGGGCATTTTCCTCCGATTTAGACACTGAAGGTGGGTCC ACCGCCGCAACTGAAGCAGAAACTCAAAGTAGATCTGGAAGCAACGGCACCAAGAAGAAGAAGAAGAATAATAAGAGCTTAACAATCGGATTGCCAGTGG GAATAATCGCCGCTTTTGGATTATTGATCGTAGGCACAGCTACTTCGATTTTCTCCAAGAGACGTAAGAACAATAAGCGAGAGCAATTGGATTTGGAATT GGAAGCAGGATACGATTCAGCGGGGGTACTCCTAAAAGAAGCCCCTAGAAATGGCGACAAACTGCATCCAATTAACGTAGGAGTGAGGTTTATCCCGGCG GAAGAAGTGACGAAGGCGATCGAGCTTCTGAAAAACACCGTACTCGGGGCAGGCGGATTCGGGGCGGTGTACAAGGCAGAATTAGGAGGCGAAACGGTGG CGGTGAAGAAAATCTTCCAACAGAAGCGGGGCGCGGTGGAAGGTTACATGGCGGAGTTAACTATCATCGCACAGCTAAGGCACGAGAATTTGGTTCGGCT CATAGGATGGTCGTACGACAATTTGAAGGGCGAATTTTACCTGGTGTACGAGTACATGAAGAACGGCAGCTTGGATGGACATCTATACAAGCAGAGCGAG CCGCCGCTGCTTGAATGGAAAAGGAGATACAGCATCGCGAAGGACTTGGCACGGGTGCTCTATTTCTTACACGAAAGGTGCACCGAGTGCGTACTCCACC GGGACATCAAATCCAGCAACGTATTGCTTGATTCTCAGTTCAATGCCAAGCTGGGCGATTTCGGGTTGGCACGTGTGGTGGAAAGGGATGCCGGGTCGCA GACATTACCCGGGTTCACCCATGGGTATTTAGCGCCGGAGTGTATCCACAACCCGAAGACGAGTAAAGAGACGGACACGTTCAGTTTTGGGGTGGTGGCT TTGGAAATCGCCTGCGGGAGGAAGCCGGATGTTAAGGTCGCATCGGCGGGGGACCAGAGGGAAGACGAGTATGTTCATATTTCGAGGTGGGTTTGGGATT TGTATGGGGAGGGGAATGTGTTTGAGGCGGTGGATATGAAATTGAAAGGGAAATTTGTGAAGGAAGAGATGCATCGATTGTTGATGGTGGGTCTGCATTG TGCTCATCCGGACCCGAAGCAGAGGCCGACGATGAAGGCTGCGATAGAGGTGTTGGAATTCAAGGCTCCATTGGCCAATCTCCCGTTGCAGTATCCTACA AACAATTACTCTCGAGCACTGCCTGGGATTCTTGAACAGTATTCGTCGGTTTCTTCTGGACCGTCGGGAAGTACTAATCAGAGCTCTTCTTCAATTTTTT TTGGTAATGTAAATCAATCTTTATCGTCCATTTTCAGTTTGTCATCTCGACGGTTCACATCTAGTCAGTGGGGACCAAATCTCAAAGACATGTTCCCCTC TAGCCCCCTACGTCTGAGATATGGAATTAGACAATTCGGCGACCAAGTGGATATCGAAGAGGATGCGGAAAAAAGTGGTGGTGAGCAGGACATTGCAGGT TGTCAGCTGGTGGTCTATTATCAGCGAATTCCTTCAACTTCTTTCAGCCTTTTCTGGGTTCCGGGTACATACTATTCGGAGGTCAGCGGCTACTCAGGAA ACCGCCTTCCAAAGTGCCGCCCCAAAGTCAACATCCGAGAAGCCATTGATCCGTTCATGAGTCGCTCCTGGTGCTGGCGTTGTCCATTACAGGATGGTAA TTCGCTAATCCTCCCCCGTTACGGTTACTTTCTCCTCATTGGAGAGTCCTTGTCGCTACCCTTCTCTTCCGGCTACTTCCATAGCCTCACCCCGTGCATG GTCGCATTCCTGACCGTTACAGTTCAAAACGCTTGGACCTACAATATTCTTTGA
AA sequence Show only first row Show all	>Lus10033782 pacid=23172846 polypeptide=Lus10033782 locus=Lus10033782.g ID=Lus10033782.BGIv1.0 annot-version=v1.0 MKIPAEDILRNVYYRHPMVADDSIVWYRLRPCTDEESWKAIYYLVTTFPACNNLELYFEFDGAIDGVGGSGGQSSKIGSPVCEHPSDRSLTFLAVTYLFP RNPTPSNMHIHILLINCASSSSSHSSVMKREKNLEKMATTMITIIISTVISSLCISTCHSAPLSFNYTNFEQCSDSIRLSGRASCLNFINLTSSDFYITG QAKYSKPMRLWDASTGDLANFTTTFTFATDNDNGTWTCDGLAFFIASSNYSTPAVNASDGLFGLVDNKHMYNSTQNPFVAVEFDTYNNPDWDVWNGFSHV GIDVNSIQSVTSKRWRSYANGTTMLAQVSYRAKKLCVEFTGLTEDMTEVPRDTLCYEVDLKDYLSEWAVLGFSASTAFRYQSHTIKSWAFSSDLDTEGGS TAATEAETQSRSGSNGTKKKKKNNKSLTIGLPVGIIAAFGLLIVGTATSIFSKRRKNNKREQLDLELEAGYDSAGVLLKEAPRNGDKLHPINVGVRFIPA EEVTKAIELLKNTVLGAGGFGAVYKAELGGETVAVKKIFQQKRGAVEGYMAELTIIAQLRHENLVRLIGWSYDNLKGEFYLVYEYMKNGSLDGHLYKQSE PPLLEWKRRYSIAKDLARVLYFLHERCTECVLHRDIKSSNVLLDSQFNAKLGDFGLARVVERDAGSQTLPGFTHGYLAPECIHNPKTSKETDTFSFGVVA LEIACGRKPDVKVASAGDQREDEYVHISRWVWDLYGEGNVFEAVDMKLKGKFVKEEMHRLLMVGLHCAHPDPKQRPTMKAAIEVLEFKAPLANLPLQYPT NNYSRALPGILEQYSSVSSGPSGSTNQSSSSIFFGNVNQSLSSIFSLSSRRFTSSQWGPNLKDMFPSSPLRLRYGIRQFGDQVDIEEDAEKSGGEQDIAG CQLVVYYQRIPSTSFSLFWVPGTYYSEVSGYSGNRLPKCRPKVNIREAIDPFMSRSWCWRCPLQDGNSLILPRYGYFLLIGESLSLPFSSGYFHSLTPCM VAFLTVTVQNAWTYNIL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10530			Concanavalin A-like lectin pro...		Lus10033782 [exp]	0	1
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Lus10031656 [exp]	3.2	0.8124
AT5G51890			Peroxidase superfamily protein...		Lus10031664 [exp]	4.5	0.8792
AT1G77100			Peroxidase superfamily protein...		Lus10018929 [exp]	7.5	0.8213
AT5G48540			receptor-like protein kinase-r...		Lus10025875 [exp]	9.5	0.8410
AT2G19130			S-locus lectin protein kinase ...		Lus10029802 [exp]	12.2	0.8334
AT5G51890			Peroxidase superfamily protein...		Lus10027405 [exp]	12.4	0.8347
AT2G34930			disease resistance family prot...		Lus10006945 [exp]	13.4	0.8231
AT2G17120		LYM2	lysm domain GPI-anchored prote...		Lus10023945 [exp]	13.6	0.7831
AT5G12470			Protein of unknown function (D...		Lus10009956 [exp]	14.0	0.8046
AT2G34930			disease resistance family prot...		Lus10006946 [exp]	14.3	0.7785

Compare expression of checked genes

Lus10033782 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.