Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10530 434 / 2e-143 Concanavalin A-like lectin protein kinase family protein (.1) AT5G65600 390 / 9e-126 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 336 / 5e-105 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 320 / 3e-99 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 319 / 1e-98 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 310 / 2e-95 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 305 / 1e-93 RLK receptor lectin kinase (.1) AT4G02420 302 / 2e-92 Concanavalin A-like lectin protein kinase family protein (.1) AT5G01550 292 / 1e-88 LECRKA4.2 lectin receptor kinase a4.1 (.1) AT4G29050 285 / 3e-86 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014648 [exp] 1287 / 0 AT5G10530 462 / 4e-154 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020452 [exp] 480 / 1e-160 AT5G10530 510 / 2e-173 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007077 [exp] 456 / 9e-149 AT5G10530 511 / 4e-171 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004277 [exp] 429 / 3e-141 AT5G10530 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004279 [exp] 428 / 3e-140 AT5G10530 578 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10033782 [exp] 432 / 2e-138 AT5G10530 351 / 2e-108 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029555 [exp] 417 / 2e-136 AT5G10530 687 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029554 [exp] 389 / 2e-125 AT5G10530 590 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029553 [exp] 383 / 2e-123 AT5G10530 591 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G283866 [exp] 518 / 3e-175 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283208 [exp] 518 / 3e-175 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283212 [exp] 518 / 5e-175 AT5G10530 385 / 3e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283400 [exp] 516 / 2e-174 AT5G10530 494 / 6e-167 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283700 [exp] 514 / 2e-173 AT5G10530 497 / 7e-168 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G262866 [exp] 512 / 4e-173 AT5G10530 384 / 1e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283204 [exp] 504 / 1e-170 AT5G10530 472 / 3e-159 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283200 [exp] 496 / 1e-167 AT5G10530 382 / 8e-125 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G284200 [exp] 494 / 1e-167 AT5G10530 441 / 8e-148 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004200 [exp] 474 / 4e-158 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10033783 pacid=23172754 polypeptide=Lus10033783 locus=Lus10033783.g ID=Lus10033783.BGIv1.0 annot-version=v1.0 ATGGATTCATTCATCTCATCCTCCCTTTTCCTCTTCATCTCCTTCTTCCTCTTCTTTACTAAATCCAACTCCCAACGACAACAACCAGCGGCGGCTTCAC TCTCTTTCAACTTCACTGCCTTCCCCGCCGCCACCTGCACTTCCGACATCAGACTCTCCGGCAACGCCACCTGCCTCGACTCCTCCCTCATCATCACCGA CAACGGCACCTGGAGCACCGGCCATGCCGTCTACTCCCGTCCATTCACCCTCTGGACCAACTCCTCCTCCGCCTTGCTCGTCGCCGACTTCACCACCGAC TTCGTCTTCTCCATCGACGCTGGCCGCAACGACTCCCACGGCGACGGCCTCGCCTTCTACCTCTCCAACCTCGACTACCAGATTCCCTCCGGCCGCACCG GCGGCGCCATGGGCCTCGCCTTGAACAACATGTCCTTCGATTCTTCATCCAACCCCTTCGTCGCCGTCGAATTCGACACCTTCGCCAACGAGTGGGACGT CCCGCATGAGGAGCACGTCGGCGTCGACGTCAACTCCGCCATCTCCAAAAACTCAGCCGCATGGAACGGCAGCTTCTTAGACGGACGGAGATTGGACGCC AGGATCACTTACAATTCCGTCGCCAGAAGCCTCTGCGTCTATTACCCTGGATTCTCAAACAATCAGCTCGTCGTTTCCCGCCAGGAGCTCTGCCACGACC TGGATCTCACCGAGCACTTGAACGAGTCGGTAAACGTTGGGTTCTCGGCGTCGACGGGAGAAGCCACGGAGTTCCACAGAGTTCACTCTTGGTCCTTCAG CTCAAATTTGGTAGTTAGGCCAGTACCTCTTCCTCCAACGGGTAGCACACCAGCTGTTGGAGGAAAAGAATACACGGCGGGAATAGCGATCGGAGTAGCG GTTGGAACCGGTTCTTGCTTCGCAATTTTGCTGCTCGGCGGGCTTGGATTGTTCCTGTTCTGGAGGAGGAAAAGGAACAACATATCAGGAAACGAGTTTG TGAGAGTGAATGGAGCTAGGAACGTTCCCAGGGAGGCTCTTGATCGCGCCACAAACAACTTCAGCGAAGATGAGAAGCTCGGGGAAGGAGGATTCGGAGC CGTTTTCAGAGGCTACGTGGATGATCTCAACATGTTCGTGGCCGTCAAGAGAATTCTCAGAGGAGCAGCTCAAGGTGTTCAAGAGTACGCTAACGAGATC ATGATCATCAGCCAACTCAGGCACAAGAACTTGGTGCAGCTAATCGGATGGTGTCACGAGAAACGCGAACTTCTGCTAGTGTATGAGTACATGGAGAATC GCAGCTTGGATTTCCACATCTTTGACAAAGAGAATTACCTGGATTGGAACAATAGGTACAAAGTTGCTCAGGGATTAGCATCCGCTTTGCATTACCTCCA TGAAGAGTGCAACCAATGTGTACTCCACAGAGACATCAAGGCCAACAACGTAATGCTGGACGCTGATTTCAACCCGAAACTCGGAGATTTCGGGCTGGCT AGGCTGGTCGATCACGACGCTGCTTCACAAACATTACTTGGGGGAACTCGAGGCTACATGGCTCCGGAATGCCTCGAGAGGGGGAAGACGAGTAAGGAAT CCGACGTCTATGGGTTCGGTGTGGTTGCGTTGGAGATCGCCACAGGGAGGAGGCCATTCATTGAGATCGAAATCGAAAACGACTCAGAAGGCGATATGGT GCATATCGCCAGGTGGGTTTGGGTGCTTTATGGAAGAGGAAGGATTCTGGATGCAGTTGATAGGAAACTAAGAGGGAAGTTCAATGAGGAACAAGCAGAG CGTTTGATGATTGTGGGGCTATGGTGCTGTCATCCAAGTCCTCGTCTCCGTCCTTCGATAAGAACGGCGATGGAGATGTTGAATTTCAGTTCTCCATTGC CGAATCTGCCTTTGAAGTTTCCAGGGTCCGTACATTCTACGCCTTCCAAACTATTCTCGTCATTCTCCTTATCTACTGTCAACAGTACAATCCCTGAAGA AGCTTTCAAGAGTAGAGCAGGAAGCAGCACAGATGATAGTAGTTCAAAAGATGGCTTGTTGATGATGACTGATCCGAAATCTAAATCGAAACCCCAGTCT TCGACAGACCCTTTCGTTCGACATAGCAAAGGCGGCCGCGGCTCTGCGGCATTCCCGCGGAATCCCCACCCCTCGTTTTTCGACAGTGTGTAA
AA sequence Show only first row Show all	>Lus10033783 pacid=23172754 polypeptide=Lus10033783 locus=Lus10033783.g ID=Lus10033783.BGIv1.0 annot-version=v1.0 MDSFISSSLFLFISFFLFFTKSNSQRQQPAAASLSFNFTAFPAATCTSDIRLSGNATCLDSSLIITDNGTWSTGHAVYSRPFTLWTNSSSALLVADFTTD FVFSIDAGRNDSHGDGLAFYLSNLDYQIPSGRTGGAMGLALNNMSFDSSSNPFVAVEFDTFANEWDVPHEEHVGVDVNSAISKNSAAWNGSFLDGRRLDA RITYNSVARSLCVYYPGFSNNQLVVSRQELCHDLDLTEHLNESVNVGFSASTGEATEFHRVHSWSFSSNLVVRPVPLPPTGSTPAVGGKEYTAGIAIGVA VGTGSCFAILLLGGLGLFLFWRRKRNNISGNEFVRVNGARNVPREALDRATNNFSEDEKLGEGGFGAVFRGYVDDLNMFVAVKRILRGAAQGVQEYANEI MIISQLRHKNLVQLIGWCHEKRELLLVYEYMENRSLDFHIFDKENYLDWNNRYKVAQGLASALHYLHEECNQCVLHRDIKANNVMLDADFNPKLGDFGLA RLVDHDAASQTLLGGTRGYMAPECLERGKTSKESDVYGFGVVALEIATGRRPFIEIEIENDSEGDMVHIARWVWVLYGRGRILDAVDRKLRGKFNEEQAE RLMIVGLWCCHPSPRLRPSIRTAMEMLNFSSPLPNLPLKFPGSVHSTPSKLFSSFSLSTVNSTIPEEAFKSRAGSSTDDSSSKDGLLMMTDPKSKSKPQS STDPFVRHSKGGRGSAAFPRNPHPSFFDSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10530			Concanavalin A-like lectin pro...		Lus10033783 [exp]	0	1
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10015754 [exp]	1.4	0.9124
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10000310 [exp]	2.4	0.9021
AT5G10530			Concanavalin A-like lectin pro...		Lus10014648 [exp]	5.3	0.8315
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10024366 [exp]	5.8	0.9087
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10010866 [exp]	6.5	0.8826
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10003234 [exp]	6.6	0.8663
AT1G24140			Matrixin family protein (.1)		Lus10005605 [exp]	8.7	0.8941
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10011058 [exp]	9.8	0.8828
AT3G57260		AtPR2, PR-2, PR...	PATHOGENESIS-RELATED PROTEIN 2...		Lus10027860 [exp]	10.2	0.8886
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Lus10031843 [exp]	12.3	0.8754

Compare expression of checked genes

Lus10033783 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.