Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33820 478 / 7e-160 Glycosyl hydrolase superfamily protein (.1) AT4G33810 463 / 2e-154 Glycosyl hydrolase superfamily protein (.1) AT4G33860 461 / 5e-153 Glycosyl hydrolase family 10 protein (.1) AT4G33840 455 / 8e-151 Glycosyl hydrolase family 10 protein (.1) AT2G14690 445 / 6e-147 Glycosyl hydrolase superfamily protein (.1) AT4G33830 436 / 3e-143 Glycosyl hydrolase family 10 protein (.1) AT4G38650 366 / 1e-116 Glycosyl hydrolase family 10 protein (.1) AT4G25650 362 / 2e-115 TIC55-IV, PTC52, ACD1-LIKE TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) AT4G38300 220 / 2e-65 glycosyl hydrolase family 10 protein (.1) AT1G10050 205 / 2e-54 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014646 [exp] 695 / 0 AT4G33820 336 / 6e-110 Glycosyl hydrolase superfamily protein (.1) Lus10033786 [exp] 462 / 2e-153 AT4G33860 663 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10014642 [exp] 460 / 1e-152 AT4G33840 663 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10020985 [exp] 444 / 1e-146 AT4G33840 634 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10042159 [exp] 448 / 1e-139 AT5G62600 1352 / 0.0 modifier of snc1-1, 14, ARM repeat superfamily protein (.1) Lus10025054 [exp] 367 / 3e-117 AT4G38650 677 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10025415 [exp] 352 / 1e-111 AT4G25650 689 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10015288 [exp] 348 / 3e-110 AT4G25650 697 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Lus10015283 [exp] 348 / 8e-110 AT4G25650 621 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G087800 [exp] 580 / 0 AT4G33840 573 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087700 [exp] 576 / 0 AT4G33860 529 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087600 [exp] 544 / 0 AT4G33820 506 / 4e-175 Glycosyl hydrolase superfamily protein (.1) Potri.009G087900 [exp] 457 / 1e-151 AT4G33840 695 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.003G219000 [exp] 389 / 7e-126 AT4G25650 667 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.004G173300 [exp] 377 / 9e-121 AT4G38650 753 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.001G005900 [exp] 360 / 1e-114 AT4G25650 731 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.003G219400 [exp] 357 / 1e-113 AT4G25650 672 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.003G219550 [exp] 357 / 1e-113 AT4G25650 664 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2) Potri.001G005700 [exp] 341 / 2e-107 AT4G25650 634 / 0.0 TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS, 55 KDA - IV, PROTOCHLOROPHYLLIDE-DEPENDENT TRANSLOCON COMPONENT, 52 KDA, ACD1-like (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00331 [flax] [poplar] Glyco_hydro_10 Glycosyl hydrolase family 10 CL0516 [flax] [poplar] ISP-domain PF00355 [flax] [poplar] Rieske Rieske [2Fe-2S] domain
Representative CDS sequence Show only first row Show all	>Lus10033784 pacid=23172730 polypeptide=Lus10033784 locus=Lus10033784.g ID=Lus10033784.BGIv1.0 annot-version=v1.0 ATGGAGGCTTTCAGTTTCACAAAAACTTTCACCTCTCTTCCCATTCACAATCCAATCCACAGCAGTAGTAGTTCCCGCCTCACCGAATTCAGATTCCGTC GACAACCTATTTCTCATCTCAATCCCATCCATGGAAGAAGAAGAAGAAATAACTCGTCGAGATCCAAGCTCTTCGCTTCCGTTTCAGATCAGATTTCCGG CCCACCACCACTGGAAATCGCCGTGAACGATGATGACGATGATAAGCCGGAGGAGGAGGTAGAGGAGGAGGAGAAATTCGACTGGTTTGCTCACTGGTAT CCGGTAATGCCGGTCTGCGATCTGGACAAGAGGATCCCACACGCGAAGACGGTAATGGGTATCGATTTGGTGGCGTGGTGGGATCGGAACGAAGGTGCAT GGAAGGTGTTCGACGATATGTGTCCTCACAGATTGGCTCCACTCTCTGAAGGGAGGATTGATCAGTGGGGGAGGTTGCAATGTGTCTATCACGGCTGGTG TTTCGATGGTTCTGGAGCGTGTAAGCTCATTCCACAGGCTCCCTTAGATGGCCCTCCGATACACACATCCAAGAGAGCTTGTGTAGCATCATATCCAAGT ACTGTCCAGAACGGCATTTTGTGGGTTTGGCCAAATAGTGATCCTAAATACAGCGACATTCTTTCAGTGCAAAAGCCTCCATATATTTCAGAGCTAGATG ATCCTTCATTCACTAAACCAATGGCAAACCGAGACTTCCCGTTCGGGTACGAAATCTTGACCGAAAATCTGATCGACCCTTCTCATGTACCATACGCTCA CTTCAAGCTGCTCCCTAATCCAACCCCGAAAGAAAAAAGGGTTGACAGAGAAGGAGGCACCCCAGTTGAAATGAAGTTAGAAACATTTGATATGAATGGA TTTCATACTGCTAGATTTGGAGGAGAGAGCAAGTTCATTGCACCTTGTGTGTATTATTCATCCGTTAGCGTGACAGCACTTCGAGAGCTTTCGAAAAAAG AAGGTGACAGTTCGTCATCAGCAGTTCCGAAAGTTAAGTGCTTGGCTGCACCAGGAAAGCCTCTCTATGATGGAGGAATCATGGATAACACCACACATTT GGTTGCGAACAGGACATGGAAGGTTTACCTGGATAAGCGAAACCTCTATGTATTCTCTGCTTGGCTTCAGATCAACAAAGAAAGCGGAATCGTCGTGGAT GCTGTTTTCAGAAGATCTACTGGTGAAGTACTCAATGTTGGCAGATTTATTGCTAGAGAGGGATGTTGGTCTATGCTTAAAGGTGGTTTCTCTCCTAACT TTTCAGGCTATGTTGAGATTTTGTTCCAGAGTGAGGAAGACCCAACAGCTGAAATCCGGGCTGAAAGTATCTCGTTGCAACCATTCACCATCCAGCAATG GAGATCTCACCAGGATCAAAGCATTGAGAAGATAAGAAAGAGCAAGGTGAGATTCCGCATTGCGGATCCGAACGGGAACCCATTGCCAAATGCTGCTATA ACCCTCAATCAAATAACCACAAGCTTTCCCTTTGGATGCGGAATGAACGCCTACATCCTCAACTGCTCATCCTACCAGCAATGGTTCGCTTCGAGATTCA AGTACACGACTTTCACAAACGCCATGAAGTGGTATAGCACCGAGGTGGTCCAAGGCCAAGAGAACTACACCACACCGGATGCCATGCTGCAGTTCTGCAA GCAAAATGGCATTTCAATCAGAGGCCACAACATATTCTGGGACAACCCCAAGGAGCAACCTGAGTGGGTCATGAACCTTACCGGGACCCAACTACGAGAA GCTGCCGAAGAGAGGATAGAATCAGTGGTGTCAAGGTACAAAGGGGAACTCATTGCATGGGATGTGGTTAATGAGAATCTTCATTTCAGCTTCTTTGAGG ACAGACTTGGGAAAGATGCGTCAGCACACTTCTTTAGGGAAGCTCACCTGATCGATCCGGATGTTAGATTGTTCATGAACGAGTACAACACGGTCGAAAA TAACCGTGACACAACTGCACATCCTGTCAATTACCTGAAGAGATTTGAAGAAATTCGTGCATATCCTGGGAATGCAAGGATCCGTGCAGGAATCGGATTG CAAACTAGTAGTTTTGGTTATGGAAAACCGGATCTTGCACACATGAGGTCTGCTTTGGACGTTTATAGCTCAATGGGATTGCCCTTGTGGCTCACTGAAG TGTCTGTGCACAGGGGACCGAATCAAGGAGAGTACTTGGAGCAGATCCTGAGGGAAGGCTACTGCCATCCTGCTGTGGAAGGAATTATCATGTTTGCTGG ACCGGAATCAGCCGGTTTCAAAGAATTAACCCTGGCAGACAAAGACTTCAGGAACACTGCAGCTGGAGATGTGGTGGATAAGCTGCTCAATGAGTGGAAA AGTGATGGTGATGTAGCTTATGCAGCAGATGGTGAGGGATTCGTACAGGGTTCGTTGTTTTACGGAGATTACGAGATAAGTATTCGAAATCCGGAAACCA ATTCCGTCACTAGTTTGACTTACAAGCACTCTAAAGCAGCTCATGGAGACTCTGCTGTCAATCTTCATGTTCATGCTTAG
AA sequence Show only first row Show all	>Lus10033784 pacid=23172730 polypeptide=Lus10033784 locus=Lus10033784.g ID=Lus10033784.BGIv1.0 annot-version=v1.0 MEAFSFTKTFTSLPIHNPIHSSSSSRLTEFRFRRQPISHLNPIHGRRRRNNSSRSKLFASVSDQISGPPPLEIAVNDDDDDKPEEEVEEEEKFDWFAHWY PVMPVCDLDKRIPHAKTVMGIDLVAWWDRNEGAWKVFDDMCPHRLAPLSEGRIDQWGRLQCVYHGWCFDGSGACKLIPQAPLDGPPIHTSKRACVASYPS TVQNGILWVWPNSDPKYSDILSVQKPPYISELDDPSFTKPMANRDFPFGYEILTENLIDPSHVPYAHFKLLPNPTPKEKRVDREGGTPVEMKLETFDMNG FHTARFGGESKFIAPCVYYSSVSVTALRELSKKEGDSSSSAVPKVKCLAAPGKPLYDGGIMDNTTHLVANRTWKVYLDKRNLYVFSAWLQINKESGIVVD AVFRRSTGEVLNVGRFIAREGCWSMLKGGFSPNFSGYVEILFQSEEDPTAEIRAESISLQPFTIQQWRSHQDQSIEKIRKSKVRFRIADPNGNPLPNAAI TLNQITTSFPFGCGMNAYILNCSSYQQWFASRFKYTTFTNAMKWYSTEVVQGQENYTTPDAMLQFCKQNGISIRGHNIFWDNPKEQPEWVMNLTGTQLRE AAEERIESVVSRYKGELIAWDVVNENLHFSFFEDRLGKDASAHFFREAHLIDPDVRLFMNEYNTVENNRDTTAHPVNYLKRFEEIRAYPGNARIRAGIGL QTSSFGYGKPDLAHMRSALDVYSSMGLPLWLTEVSVHRGPNQGEYLEQILREGYCHPAVEGIIMFAGPESAGFKELTLADKDFRNTAAGDVVDKLLNEWK SDGDVAYAADGEGFVQGSLFYGDYEISIRNPETNSVTSLTYKHSKAAHGDSAVNLHVHA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33820			Glycosyl hydrolase superfamily...		Lus10033784 [exp]	0	1
AT5G20590		TBL5	TRICHOME BIREFRINGENCE-LIKE 5 ...		Lus10027637 [exp]	11.7	0.7281
AT1G33260			Protein kinase superfamily pro...		Lus10019741 [exp]	12.2	0.7363
AT2G47470		ATPDI11, ATPDIL...	UNFERTILIZED EMBRYO SAC 5, MAT...		Lus10020691 [exp]	20.3	0.7322
AT5G44670			Domain of unknown function (DU...		Lus10024731 [exp]	32.6	0.7028
AT5G51010			Rubredoxin-like superfamily pr...		Lus10022430 [exp]	34.1	0.7085
AT5G01020			Protein kinase superfamily pro...		Lus10037165 [exp]	49.3	0.6934
AT3G12350			F-box family protein (.1.2)		Lus10010606 [exp]	82.9	0.6537
AT4G37250			Leucine-rich repeat protein ki...		Lus10030333 [exp]	97.6	0.6761
AT2G40280			S-adenosyl-L-methionine-depend...		Lus10040950 [exp]	133.2	0.6606
AT1G70000	MYB		myb-like transcription factor ...		Lus10030813 [exp]	144.6	0.6521

Compare expression of checked genes

Lus10033784 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.