Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33840 647 / 0 Glycosyl hydrolase family 10 protein (.1) AT4G33860 644 / 0 Glycosyl hydrolase family 10 protein (.1) AT4G33830 612 / 0 Glycosyl hydrolase family 10 protein (.1) AT4G33810 412 / 2e-138 Glycosyl hydrolase superfamily protein (.1) AT4G38650 401 / 8e-134 Glycosyl hydrolase family 10 protein (.1) AT4G33820 399 / 9e-133 Glycosyl hydrolase superfamily protein (.1) AT2G14690 375 / 2e-123 Glycosyl hydrolase superfamily protein (.1) AT4G38300 237 / 7e-74 glycosyl hydrolase family 10 protein (.1) AT1G58370 199 / 1e-54 ATXYN1, RXF12 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) AT1G10050 192 / 4e-52 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014642 [exp] 1084 / 0 AT4G33840 663 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10020985 [exp] 718 / 0 AT4G33840 634 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10033784 [exp] 452 / 1e-149 AT4G33820 480 / 2e-160 Glycosyl hydrolase superfamily protein (.1) Lus10025054 [exp] 375 / 1e-123 AT4G38650 677 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10014646 [exp] 320 / 1e-103 AT4G33820 336 / 6e-110 Glycosyl hydrolase superfamily protein (.1) Lus10034490 [exp] 309 / 2e-98 AT4G38650 566 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10033787 [exp] 283 / 2e-92 AT4G33860 266 / 2e-86 Glycosyl hydrolase family 10 protein (.1) Lus10037528 [exp] 204 / 9e-56 AT1G58370 1064 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10028242 [exp] 194 / 2e-53 AT1G58370 998 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G087900 [exp] 662 / 0 AT4G33840 695 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087800 [exp] 534 / 0 AT4G33840 573 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087700 [exp] 506 / 1e-174 AT4G33860 529 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087600 [exp] 464 / 2e-158 AT4G33820 506 / 4e-175 Glycosyl hydrolase superfamily protein (.1) Potri.004G173300 [exp] 390 / 3e-129 AT4G38650 753 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.002G113066 [exp] 218 / 7e-62 AT1G58370 1064 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Potri.002G113132 [exp] 204 / 3e-56 AT1G58370 1352 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF02018 [flax] [poplar] CBM_4_9 Carbohydrate binding domain CL0058 [flax] [poplar] Glyco_hydro_tim PF00331 [flax] [poplar] Glyco_hydro_10 Glycosyl hydrolase family 10
Representative CDS sequence Show only first row Show all	>Lus10033786 pacid=23172869 polypeptide=Lus10033786 locus=Lus10033786.g ID=Lus10033786.BGIv1.0 annot-version=v1.0 ATGCAGATTTATCAGTTTCCTTCAGTCCGTGGATTGCCTTACGACTATACAGCTAGCATCAAGTGCCTGGAAGTGCCCCACAAAGCTCAGTATAAGGGAG GAATCATAGTCAACCCGGACGTGAATAATGGGATGACAGGTTGGACCACATTTGGAAACCCTACCCTTGAAAACAGAACTGCTGCATCCAACATCAACAC CTTCGTTGTGGCTCACACCAGAAGTGCACCTTTCGACAGTGTCTCCCAAACTGTTTACTTACATAGCCATCTCCTCTACACCTTCTCTGCTTGGGTACAG GTAAACCAAGGGAACGTCCACGTCACGGCGACATTCAAGACCTCTGACGGGTCGTTCCTACGAGCCGGAGGAGCAGTGGCCGAATCAGGATGTTGGTCAA TGCTTAAAGGTGGCCTCACAGTTAACACCTCCGGCCAGGCTGACCTCTACTTCCACACCCATAATTCTACCGCCGACATTTGGATCGACAGCATCTCGTT ACAACCTTTCACACAAGAAGAATGGACCTCCCATCACCATCAAACCATCCAACAGATCCGGAAGAGGAAAGTGAGGATCCAAGCAGTGAACAGACAAGGG ACTCCCTTGCGGAACGCTAAAGTCTCAATCAATCGAAAATCGTCCCGGTTCCAGCTAGGATGCGCAATGAACAAGAACATCCTCACCAACCAAGCCTATC AGAAATGGTTCACGTCGAGAAGGTTCGGCGTCACCACTTTTGAAGACGAAATGAAATGGTACAGCACGGAGTACACCAGAGGACACGAGGATTACTCTGC AGCCGATTCGATGCTCCGATTCTCCAAGATGCATAACATTGCGGTCCGCGGCCACAACGTTCTGTGGGACGATCCGCATTACCAGCCCGGATGGTTGACT TCACTATCCGGACCGGATTTTGCCGCGGCGGTCAACAGAAGGATCAACTCCGTGGTATCTAGATACAAAGGGCAGCTTATTTCGTGGGATGTGGTCAACG AGGATGTCCATTTCTCTTTCTTCGAGAGCAAACTTGGGGCGCAAGCTTCCGGGAACGCGTACCGTATGGCTCACCGGTTGGATCCCAATACCCCGTTGTT CATAAACGATTTCAATACGATTGAAGAGAGTCGAGACGGGGTGTCAGTGCCTGGAAAGTATTTACAGAAGCTAAGAGAGGTGAGTAGGTTTTCTGATAAC GTGAGGATCAAGTTTGGGATCGGTTTGGAGGCTCATTTCGGGGGGACTCCGAACATTCCTTACATGAGATCTTCAATCGACACGCTTGCAGCTGCTGGAA TTCCGATTTGGCTTACGGAGGTGGACGTTAAATCGAGCCCCGATCAGGCCGGTTACTTGGAGCAAGTGCTGAGAGAAGGGCACGGTCATCCGAAAGTGGA CGGGATGGTGCTTTGGGCGGCGTGGAAGCCGCAAGGTTGTTACAGGATGTGTTTGACTGACAACGAGTTCAGGAACTTGCCTACGGGAGACGTGGTGGAC AAGCTACTGGGAGAGTGGGGTGGATATGGTTACTTGGGGGAAACGGATGAGGATGGTTACTTGGAGACTTCTCTTTTTCGTGGAGAGTACGAGGTTGCAA TAAGTCATCCCGATTTGTTTGGGAACTCTACTACTACCATGGCTAAAAAGCTCTCTGTAGCTTCTACTCCTGTTGATGATGATGATGATGATGCTACTGG GAACCCTTTGATTCTTCAAGTGATGGCTTAA
AA sequence Show only first row Show all	>Lus10033786 pacid=23172869 polypeptide=Lus10033786 locus=Lus10033786.g ID=Lus10033786.BGIv1.0 annot-version=v1.0 MQIYQFPSVRGLPYDYTASIKCLEVPHKAQYKGGIIVNPDVNNGMTGWTTFGNPTLENRTAASNINTFVVAHTRSAPFDSVSQTVYLHSHLLYTFSAWVQ VNQGNVHVTATFKTSDGSFLRAGGAVAESGCWSMLKGGLTVNTSGQADLYFHTHNSTADIWIDSISLQPFTQEEWTSHHHQTIQQIRKRKVRIQAVNRQG TPLRNAKVSINRKSSRFQLGCAMNKNILTNQAYQKWFTSRRFGVTTFEDEMKWYSTEYTRGHEDYSAADSMLRFSKMHNIAVRGHNVLWDDPHYQPGWLT SLSGPDFAAAVNRRINSVVSRYKGQLISWDVVNEDVHFSFFESKLGAQASGNAYRMAHRLDPNTPLFINDFNTIEESRDGVSVPGKYLQKLREVSRFSDN VRIKFGIGLEAHFGGTPNIPYMRSSIDTLAAAGIPIWLTEVDVKSSPDQAGYLEQVLREGHGHPKVDGMVLWAAWKPQGCYRMCLTDNEFRNLPTGDVVD KLLGEWGGYGYLGETDEDGYLETSLFRGEYEVAISHPDLFGNSTTTMAKKLSVASTPVDDDDDDATGNPLILQVMA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33860			Glycosyl hydrolase family 10 p...		Lus10033786 [exp]	0	1
AT4G39480		CYP96A9	"cytochrome P450, family 96, s...		Lus10018161 [exp]	1.0	0.9561
AT5G55570			unknown protein		Lus10028870 [exp]	2.2	0.8981
AT4G25140		OLE1, OLEO1	oleosin 1 (.1)		Lus10028822 [exp]	2.8	0.8894
AT2G23180		CYP96A1	"cytochrome P450, family 96, s...		Lus10015307 [exp]	3.0	0.9056
					Lus10014003 [exp]	3.7	0.8936
AT2G13360		SGAT, AGT1, AGT	L-serine:glyoxylate aminotrans...		Lus10022424 [exp]	4.2	0.9154
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006307 [exp]	6.9	0.8873
AT2G46640			unknown protein		Lus10005993 [exp]	7.9	0.8884
AT4G38970		FBA2	fructose-bisphosphate aldolase...		Lus10031088 [exp]	8.0	0.9051
AT2G36270	bZIP	EEL, GIA1, ABI5	GROWTH-INSENSITIVITY TO ABA 1,...		Lus10022720 [exp]	8.4	0.8883

Compare expression of checked genes

Lus10033786 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.