Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33860 266 / 1e-86 Glycosyl hydrolase family 10 protein (.1) AT4G33840 252 / 5e-81 Glycosyl hydrolase family 10 protein (.1) AT4G33830 251 / 1e-80 Glycosyl hydrolase family 10 protein (.1) AT4G33810 165 / 2e-48 Glycosyl hydrolase superfamily protein (.1) AT4G33820 158 / 1e-45 Glycosyl hydrolase superfamily protein (.1) AT2G14690 149 / 4e-42 Glycosyl hydrolase superfamily protein (.1) AT4G38650 138 / 5e-38 Glycosyl hydrolase family 10 protein (.1) AT4G38300 91 / 6e-22 glycosyl hydrolase family 10 protein (.1) AT4G08160 78 / 1e-16 Atxyn3 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1.2) AT1G58370 74 / 2e-15 ATXYN1, RXF12 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020985 [exp] 292 / 9e-97 AT4G33840 634 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10033786 [exp] 282 / 8e-93 AT4G33860 663 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10014642 [exp] 280 / 7e-92 AT4G33840 663 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10033784 [exp] 192 / 1e-56 AT4G33820 480 / 2e-160 Glycosyl hydrolase superfamily protein (.1) Lus10014646 [exp] 180 / 1e-54 AT4G33820 336 / 6e-110 Glycosyl hydrolase superfamily protein (.1) Lus10025054 [exp] 142 / 2e-39 AT4G38650 677 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10034490 [exp] 135 / 4e-37 AT4G38650 566 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10007243 [exp] 69 / 1e-13 AT1G58370 1291 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10028243 [exp] 69 / 1e-13 AT1G58370 1278 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G087900 [exp] 275 / 4e-90 AT4G33840 695 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087800 [exp] 208 / 3e-64 AT4G33840 573 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087600 [exp] 199 / 4e-61 AT4G33820 506 / 4e-175 Glycosyl hydrolase superfamily protein (.1) Potri.009G087700 [exp] 199 / 5e-61 AT4G33860 529 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.004G173300 [exp] 150 / 1e-42 AT4G38650 753 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.002G113132 [exp] 73 / 5e-15 AT1G58370 1352 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Potri.002G113066 [exp] 66 / 2e-12 AT1G58370 1064 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00331 [flax] [poplar] Glyco_hydro_10 Glycosyl hydrolase family 10
Representative CDS sequence Show only first row Show all	>Lus10033787 pacid=23172783 polypeptide=Lus10033787 locus=Lus10033787.g ID=Lus10033787.BGIv1.0 annot-version=v1.0 ATGGTTGCTCACTCAAGGTCTCAACCTTATGACAGCGCCTCCCAGAAGCTTCATTTGCACTCTCACCTCCTTTGCGCTTTCTCTGCGTGGATCCAAGTCA GCAATGGGAGCGTCCCTGTCACGGCTACTTTGAAGACATCGTCGTCCAATAATAATGGGTATTTGGAGGGTGGAGCAGTTGTTGCTGAGTCAGGATGCTG GTCCATGCTCAAAGGTGGCTTCACCGTCGATTTCTCAGGCGAGGCTCACCTCTACTTTCACAGTGTTAATTCCACTTCTCATATTTGGGTTGATAGCATC TCCTTACAGCCATTCACTCGACAGGAATGGTCGGCTCACCAAGATCAAGCCATCCAACAGGCTAGAAAGGGGAAATTGAGGATCAAGGTAGTTGACGAAC AAGGGAATCCCCTGCCTAATGCAACAGTTTCCATCCAACAGAAAGCATTGAGCTTCCCATTCGGATGCGCCATCAACAAGAACATCCTCACAAACAAGGC CTACCAAAACTGGTTCACATCAAGAGGGTTCCGAGTGACAACATTCGAGAACGAAATGAAATGGTACGCCACCGAATCCTCACAGGGGAAAGAGGACTAC TCCGCAGCAGATGCCATGCTCTGA
AA sequence Show only first row Show all	>Lus10033787 pacid=23172783 polypeptide=Lus10033787 locus=Lus10033787.g ID=Lus10033787.BGIv1.0 annot-version=v1.0 MVAHSRSQPYDSASQKLHLHSHLLCAFSAWIQVSNGSVPVTATLKTSSSNNNGYLEGGAVVAESGCWSMLKGGFTVDFSGEAHLYFHSVNSTSHIWVDSI SLQPFTRQEWSAHQDQAIQQARKGKLRIKVVDEQGNPLPNATVSIQQKALSFPFGCAINKNILTNKAYQNWFTSRGFRVTTFENEMKWYATESSQGKEDY SAADAML

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33860			Glycosyl hydrolase family 10 p...		Lus10033787 [exp]	0	1
AT4G35220			Cyclase family protein (.1)		Lus10027872 [exp]	7.1	0.9537
AT5G25180		CYP71B14	"cytochrome P450, family 71, s...		Lus10033634 [exp]	7.4	0.8951
					Lus10025268 [exp]	10.1	0.9530
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Lus10026232 [exp]	12.4	0.9530
AT4G02210			unknown protein		Lus10008312 [exp]	13.9	0.8494
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10027988 [exp]	14.3	0.9530
					Lus10017959 [exp]	14.4	0.9045
					Lus10009411 [exp]	15.1	0.8879
AT2G31500		CPK24	calcium-dependent protein kina...		Lus10025570 [exp]	15.5	0.7721
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10005144 [exp]	16.0	0.9530

Compare expression of checked genes

Lus10033787 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.