Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14750 355 / 5e-124 APK1, ATAKN1, APK ADENOSINE-5'-PHOSPHOSULFATE \(APS\) KINASE 1, APS KINASE 1, APS kinase (.1) AT3G03900 314 / 1e-108 APK3 adenosine-5'-phosphosulfate (APS) kinase 3 (.1) AT4G39940 307 / 1e-104 APK2, AKN2 ADENOSINE-5'-PHOSPHOSULFATE \(APS\) KINASE 2, APS-kinase 2 (.1) AT5G67520 292 / 2e-98 APK4 adenosine-5'-phosphosulfate (APS) kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014641 [exp] 563 / 0 AT2G14750 365 / 5e-128 ADENOSINE-5'-PHOSPHOSULFATE \(APS\) KINASE 1, APS KINASE 1, APS kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G088100 [exp] 390 / 1e-137 AT2G14750 367 / 8e-129 ADENOSINE-5'-PHOSPHOSULFATE \(APS\) KINASE 1, APS KINASE 1, APS kinase (.1) Potri.001G293400 [exp] 390 / 2e-137 AT2G14750 365 / 6e-128 ADENOSINE-5'-PHOSPHOSULFATE \(APS\) KINASE 1, APS KINASE 1, APS kinase (.1) Potri.013G057900 [exp] 305 / 4e-105 AT3G03900 355 / 2e-126 adenosine-5'-phosphosulfate (APS) kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01583 [flax] [poplar] APS_kinase Adenylylsulphate kinase
Representative CDS sequence Show only first row Show all	>Lus10033788 pacid=23172748 polypeptide=Lus10033788 locus=Lus10033788.g ID=Lus10033788.BGIv1.0 annot-version=v1.0 ATGAATGCCGCGGCTGTAGTAAAGCCGCTGCCGGGAATCGCAACTCCGAAACCCTTATTCATGAGCTTGCGCGTCGGAGACGCCTCGATTAGTTTGAATC CCACGAAGAAGATCGGCGCCAGGTGTCTCAGAATCGAAGTTATGGACGAGTCGGCGGCGATGCGAATCAACCAGACTGCCAAGGTTGATAACGATGGCAT CGTTGCTAAGGATTCGGTGTCGGTCAATGGGCACGCCGGAAACGAGAGCAGCTCATTATCAACAGTTGGGAACTCGACTAATATAAAGTGGCACGATTGC TCTGTCGACAAAATTGCTAGGCATACGTTACTCAATCAAAAAGGTTCTGTCATATGGATCACGGGTCTCAGCGGTTCAGGAAAGAGCACTGTGGCTTGTG CTTTGAGTCAAATCTTGTACCAAAGAGGGAAGCTTTCCTATATTCTTGATGGAGATAATGTAAGACATGGTCTAAACCGTGATCTTAGTTTTAAGGCAGA AGATCGTGCAGAGAACATCCGCCGAGTTGGTAAGCTTGTCTCTGTTATGCAAACCAGATTCTGGGAGGTGGCTAAATTATTTGCTGATTCTGGTGTAATT TGCATCGCATGCCTGATTTCTCCCTACAGAAGGGACCGGGATTCCTGTCGTGCTATGTTGCCAACTGGAGATTTTATTGAGGTATTCATGGATGTCCCAC TACAAGTTTGTGAAGCCAGAGATCCTAAGGGCTTATATAAACTTGCCCGTGCAGGGAAGATCAAAGGCTTTACTGGTATTGATGATCCCTATGAGGCACC GACCGATTGTGAGATTGTACTGGAATGCAAGACAGGTGACTGTGCTTCTCCTATGGACATGGCCGAGAAAGTTGCTTGTTTCTTGGAGGAGAAGGGGTAC CTCCAAGCATGA
AA sequence Show only first row Show all	>Lus10033788 pacid=23172748 polypeptide=Lus10033788 locus=Lus10033788.g ID=Lus10033788.BGIv1.0 annot-version=v1.0 MNAAAVVKPLPGIATPKPLFMSLRVGDASISLNPTKKIGARCLRIEVMDESAAMRINQTAKVDNDGIVAKDSVSVNGHAGNESSSLSTVGNSTNIKWHDC SVDKIARHTLLNQKGSVIWITGLSGSGKSTVACALSQILYQRGKLSYILDGDNVRHGLNRDLSFKAEDRAENIRRVGKLVSVMQTRFWEVAKLFADSGVI CIACLISPYRRDRDSCRAMLPTGDFIEVFMDVPLQVCEARDPKGLYKLARAGKIKGFTGIDDPYEAPTDCEIVLECKTGDCASPMDMAEKVACFLEEKGY LQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G14750		APK1, ATAKN1, A...	ADENOSINE-5'-PHOSPHOSULFATE \(...		Lus10033788 [exp]	0	1
AT1G50170		ATSIRB	sirohydrochlorin ferrochelatas...		Lus10008769 [exp]	3.0	0.8045
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10029753 [exp]	4.0	0.8032
AT5G25510			Protein phosphatase 2A regulat...		Lus10012116 [exp]	4.2	0.7741
AT1G48320			Thioesterase superfamily prote...		Lus10043043 [exp]	6.9	0.7537
AT1G55520		ATTBP2, TBP2	A. THALIANA TATA BINDING PROTE...		Lus10002634 [exp]	7.2	0.7614
AT5G11960			Protein of unknown function (D...		Lus10004444 [exp]	8.1	0.7609
AT2G21190			ER lumen protein retaining rec...		Lus10042389 [exp]	10.5	0.7196
AT1G12710		ATPP2-A12	phloem protein 2-A12 (.1)		Lus10024494 [exp]	21.0	0.7266
AT5G11960			Protein of unknown function (D...		Lus10013530 [exp]	23.7	0.7277
AT4G34610	HD	BLH6	BEL1-like homeodomain 6 (.1.2)		Lus10017481 [exp]	24.0	0.7389

Compare expression of checked genes

Lus10033788 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.