Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39210 684 / 0 Major facilitator superfamily protein (.1) AT2G28120 635 / 0 Major facilitator superfamily protein (.1) AT1G74780 317 / 4e-101 Nodulin-like / Major Facilitator Superfamily protein (.1) AT1G18940 312 / 2e-99 Nodulin-like / Major Facilitator Superfamily protein (.1) AT2G34355 305 / 5e-97 Major facilitator superfamily protein (.1) AT5G50520 287 / 8e-90 Major facilitator superfamily protein (.1) AT5G50630 287 / 8e-90 Major facilitator superfamily protein (.1) AT5G14120 287 / 3e-89 Major facilitator superfamily protein (.1) AT2G34350 276 / 7e-86 Nodulin-like / Major Facilitator Superfamily protein (.1) AT4G34950 264 / 1e-80 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014640 [exp] 1032 / 0 AT2G39210 728 / 0.0 Major facilitator superfamily protein (.1) Lus10038682 [exp] 701 / 0 AT2G39210 829 / 0.0 Major facilitator superfamily protein (.1) Lus10037948 [exp] 692 / 0 AT2G39210 839 / 0.0 Major facilitator superfamily protein (.1) Lus10037949 [exp] 672 / 0 AT2G39210 807 / 0.0 Major facilitator superfamily protein (.1) Lus10022614 [exp] 602 / 0 AT2G39210 652 / 0.0 Major facilitator superfamily protein (.1) Lus10021513 [exp] 561 / 0 AT2G39210 587 / 0.0 Major facilitator superfamily protein (.1) Lus10042170 [exp] 321 / 7e-103 AT1G74780 566 / 0.0 Nodulin-like / Major Facilitator Superfamily protein (.1) Lus10041962 [exp] 218 / 4e-63 AT1G80530 715 / 0.0 Major facilitator superfamily protein (.1) Lus10017971 [exp] 217 / 5e-63 AT1G80530 716 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G122400 [exp] 744 / 0 AT2G39210 767 / 0.0 Major facilitator superfamily protein (.1) Potri.008G032901 [exp] 671 / 0 AT2G39210 830 / 0.0 Major facilitator superfamily protein (.1) Potri.002G133900 [exp] 659 / 0 AT2G39210 666 / 0.0 Major facilitator superfamily protein (.1) Potri.004G215600 [exp] 615 / 0 AT2G28120 810 / 0.0 Major facilitator superfamily protein (.1) Potri.009G006400 [exp] 592 / 0 AT2G28120 845 / 0.0 Major facilitator superfamily protein (.1) Potri.001G194500 [exp] 283 / 2e-92 AT2G28120 377 / 9e-130 Major facilitator superfamily protein (.1) Potri.001G329100 [exp] 291 / 1e-90 AT3G01930 869 / 0.0 Major facilitator superfamily protein (.1.2) Potri.017G064201 [exp] 288 / 2e-89 AT3G01930 805 / 0.0 Major facilitator superfamily protein (.1.2) Potri.015G067000 [exp] 280 / 7e-87 AT1G74780 562 / 0.0 Nodulin-like / Major Facilitator Superfamily protein (.1) Potri.004G173400 [exp] 275 / 7e-85 AT4G34950 682 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF07690 [flax] [poplar] MFS_1 Major Facilitator Superfamily CL0015 [flax] [poplar] MFS PF06813 [flax] [poplar] Nodulin-like Nodulin-like
Representative CDS sequence Show only first row Show all	>Lus10033790 pacid=23172872 polypeptide=Lus10033790 locus=Lus10033790.g ID=Lus10033790.BGIv1.0 annot-version=v1.0 ATGGTGGCCGACCACCCAACCGCCGATGGAGGATGGAAGTCGGCAAAGAACTTCGCCGTCCAGGTCCTATTCGGCCGGTGTTTCATGGTCTTCGCCTCGC TACTCATCATGTCCGTCTCCGGCGCAACCTACATGTTCGGTCTATACTCCCCTGACATCAAGACCTCCTTAGGCTACGACCAAACCACACTCAACCTCCT CAGCTTCTTCAAGGACTTAGGCGGCAACGTCGGCATAATCTCTGGCCTAATCAACGAAGTCGCCCCTCCCTGGGTCGTCCTCGTCATCGGCGCCGTCATG AATTTCTCCGGCTACTTCATGATCTGGCTCGCCGTCACCTACCGAATCCCCAAACCGAAGCTGTGGCAGATGTGCCTCTACATCTGCGCCGGCGCCAATT CCCAGTCCTTCGCCAACACCGGCGCTCTCGTCACCTGCGTCAAGAACTTCCCCGAATCAAGAGGCTCTGTTTTGGGGCTTCTCAAAGGCTTCGTAGGACT CAGCGGCGCAATTCTCACCCAAATTTACCACGCCTTCTACGGAGACCGAAACCCTAAGGCTTTAATCCTCCTAATCGGTTGGCTCCCTACCGCCGTCTCC TTCCTCTTCCTCCGAACCATTCGAATCATTAAAACCGCCGCCAGTTCCCAAGCTGATAAACAGCTAGGCGTCTTCTACAGAATGCTCTACATTTCCCTGG CCCTCGCCGGTTCCCTCATGATTCTAATCATCGTTCAGAACCAATTTCGATTCGACAGAGTCGAGTACGTCTCCGGCGCCTCCGCCGTTTTATTACTCCT CTTCCTCCCACTCGCGGTCGTAATTAAGGAGGAATTCGATCTCTGGCGCACTCCAATTAACGAATCCGACACTCCTCCCGAGGTCACAATCGTCGACGCC GTGGCAGAAACAGAAACCCCATCTGCATCCGCTTCCGCTCCGCCGTCTCCGAGGTGCACAGAGAACGTGTTCAGCCCGCCGAACAGAGGCGAAGACTACA CTATCCTCCAAGCTTTGTTCAGCGTGGACATGGCAATCATATTTGTGGCGACGGCGTGCGGTGTCGGAGGGACGCTGACGGCAATCGACAATTTAGGTCA AATCGGTGATTCGCTCGGGTACCCGAGACAGAGCACCACAACCTTCATCTCCCTAGTAAGCATATGGAACTACCTCGGCAGAGTAGTCTCCGGCTTCGCA TCGGAATACCTGCTGAAAAAGTACAAAATCCCCAGGCCATTGCTCTTCACAATCGTCCTCCTCTCAGCCTGCGCCGGCCATCTGCTGATCGCGTTCGCCG TGCCGAACTCGCTGTACGTGGCTTCCGTGGTGATCGGGTTTTGCTTCGGAGCGCAGTGGCCGTTGGTGTTCGCAATTATATCGGAGATCTTCGGGCTGAA GTACTACTCGACGCTGTACAATCTGGGCGGTTTTGCGAGTCCGGTCGGGTCGTATATTCTGAACGTGAGAGTGGCTGGTTATTTGTACGAAAGGGAGGCG AGGAAGCAAATGGCGGGTTCGGGTCGGATGAGGGAAGCGGGTCAGGACTTGCGTTGCGCTGGGCCCAGCTGTTACAGAATGGCTTTCTTGATAATTACTG CGGTAACTATATTTGGTACGGTTGTTTCGACGGTTCTAGTGGTGCGGACAAGGAGTTTTTACCGTGGGGATCTTTACAAGAAGTTTAGAGATGAAAAGGG AATACAAATCGTTGGTGTCGGTGATAATAATGGCCCAAAAGGCGAGTCTTCATGA
AA sequence Show only first row Show all	>Lus10033790 pacid=23172872 polypeptide=Lus10033790 locus=Lus10033790.g ID=Lus10033790.BGIv1.0 annot-version=v1.0 MVADHPTADGGWKSAKNFAVQVLFGRCFMVFASLLIMSVSGATYMFGLYSPDIKTSLGYDQTTLNLLSFFKDLGGNVGIISGLINEVAPPWVVLVIGAVM NFSGYFMIWLAVTYRIPKPKLWQMCLYICAGANSQSFANTGALVTCVKNFPESRGSVLGLLKGFVGLSGAILTQIYHAFYGDRNPKALILLIGWLPTAVS FLFLRTIRIIKTAASSQADKQLGVFYRMLYISLALAGSLMILIIVQNQFRFDRVEYVSGASAVLLLLFLPLAVVIKEEFDLWRTPINESDTPPEVTIVDA VAETETPSASASAPPSPRCTENVFSPPNRGEDYTILQALFSVDMAIIFVATACGVGGTLTAIDNLGQIGDSLGYPRQSTTTFISLVSIWNYLGRVVSGFA SEYLLKKYKIPRPLLFTIVLLSACAGHLLIAFAVPNSLYVASVVIGFCFGAQWPLVFAIISEIFGLKYYSTLYNLGGFASPVGSYILNVRVAGYLYEREA RKQMAGSGRMREAGQDLRCAGPSCYRMAFLIITAVTIFGTVVSTVLVVRTRSFYRGDLYKKFRDEKGIQIVGVGDNNGPKGESS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39210			Major facilitator superfamily ...		Lus10033790 [exp]	0	1
AT2G44760			Domain of unknown function (DU...		Lus10029792 [exp]	11.6	0.8381
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10029351 [exp]	13.8	0.8192
AT1G54520			unknown protein		Lus10015939 [exp]	14.0	0.8509
AT4G28740			unknown protein		Lus10011914 [exp]	21.6	0.8363
AT4G22220		ATISU1, ISU1	SufE/NifU family protein (.1)		Lus10002383 [exp]	29.3	0.8104
AT2G46940			unknown protein		Lus10010083 [exp]	32.8	0.7992
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10015287 [exp]	34.8	0.8191
AT5G61820			unknown protein		Lus10004249 [exp]	36.5	0.8271
AT4G35760			NAD(P)H dehydrogenase (quinone...		Lus10041842 [exp]	38.2	0.7775
AT5G05200			Protein kinase superfamily pro...		Lus10012864 [exp]	38.6	0.8251

Compare expression of checked genes

Lus10033790 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.