Plant FIBer expression Database

Lus10033791 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G60995 763 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014638
[exp]
1172 / 0 AT1G60995 808 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G211700
[exp]
888 / 0 AT1G60995 786 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09746 Membralin Tumour-associated protein
Representative CDS sequence
>Lus10033791 pacid=23172805 polypeptide=Lus10033791 locus=Lus10033791.g ID=Lus10033791.BGIv1.0 annot-version=v1.0
ATGGATCCAGAACAGACTTTCATAAGATTGCAAGATCGGTTTTCGCAGGTGTTGACTGCCAAAGTGAGGGCAACTTTGGAGTATGTCTATTTGTTTATTG
CCATCACTCTCTTCAGCATTCTCGTGGTCATGCACGCCAATTATGTTCAGCAGCCTGGATGTTCGACTGAGCTTCCTGGTGTTGAAGCGCTGGATGCCCA
ACTTATTCGTATAAAGATCACTAGTGCAGGACTATGGTCGCAGAATGAGTCAGAATATAGCATTGAAGATGTTCCTGATTTGAATGTTGTAACAGATAAA
TTTGAACAGCCAAATGTTGGAACAGATGATTTAGCGCTGTTGGCTTCAAAATTTTGGCATAACTGGATTGGTTTCAGTACCAGGAAGGGGAAATTGACAT
TGAATTTTTGGAGGACTGATAATGAACTTGTTGAACAACAGCATGAAAGCTCTTCCACAGAGAGCTCTAAATCAGTGATCGATGATAGCGTCACTAAAAC
TGAGAGGGAAACACGCAGCAGGTTGTATATGTTAGTCAAGAACACGTTAAAGATAGCTATTGCTCATGTCAACAAAAAGTGGCACAGGCGTCTATCATTC
ATTTGGAGATTTGTATTGCAAATATCTCAAGGTATCCAGAAGCTATGGAATATTACGGGCATTCGTTTGAATCTTGATGTTCCTAAGTGGCTAAGAATAC
TTCACTTGGACAGGGCTAACTCATTTGCAGTGCAGTGGCTTGAAAAGAAAAGCAAAGGTTTTGAACCAACCTATCTGTACACCATGGAAAAGGGCTATTT
CTTGCTTCCTGAAGAGGCAAGGTTGCAACATAACATACACACAGTGAATGTAACCATATCAGCTTGGCATCCATGTTTCGGTAACAGGTGGCAACAACTT
CTGATCAATCGAGTGGTTGGCTACGATACCATATTGATGAATAGTATACTCAGCTCTCCCGGGCATGGTTACCTTTATAACTTTCAAACAAACGAGTTCT
ACAATCTCAGCTATGCTCAATTACCACCTGAAGGTCCTGCAAAGTTTGGAGACTATCTGGTAACCAAATGTGGTGTGCTTATGATGTCGCTGTTTGTGTT
CTTTACCACAACAATGTCTGTATCCTTTACACTGAGAGAAACACAGACGCGGATGTTGAAGTTTACAGTGCAGCTTCAACACCATGCTCGACATCACTTG
CCAACATTTCAATTGATCTTTGTCCATGTGATTGAATCCCTCGTCTTTGTGCCAATAATGATCGGAATCCTGTTTTTCCTGTTTGAGTTCTATGATGATC
AGCTTTTGGCTTTCATGGTCTTGATTCTTGTTTGGTTGTGTGAACTCTTCACACTGATAAGTGTCCGCACACCTATATCAATGAAGTTCTTCCCTCGCTT
CTTTTTGCTCTATTTTCTGGTCTTCCACATCTATTTCTTCTCCTATACATACGGCTTTTCCTATCTAGCTCTCTCTACCACTGCAGCATTCATGCAGCAC
TTGATCCTATACTTTTGGAATCGCTTTGAGGTACCAGCCCTGCAGAGGTTTATGCAGAATCGAAGAACGCAGCTTCAGCAACATCCTGACTTCCACATAA
CCTCATCAACCATATTCGCATCAACTTTACACATTACAAGATTCAACACCAGGAACCCCCAAGGTCCCCTGAACGCGGAAATGGGAGTGAGGCCTGGTTC
CGAGCAAATGCCTCCCGTAGCAACTACGGGAATAGCAGAGCCTGCTGTGGGAAACAACAGCGTGGGGGAAGCAGAGAGTGGAGCTGGTGCTGCTAATGTA
GGGTCAATGAATTCGTTCAGTTCATTGTTATTGTGGATTCTAGGAGGGGCTTCTTACGAAGGGCTCAACACGTTTCTTTCAATGTTTAGAGACATGAGAG
ATCATCAGGGCCAAGTTTTTGCTGAAAACCAAAGTCGGGGAGGAGAGCAGACGACCGGTGAGGATGTTGATTAA
AA sequence
>Lus10033791 pacid=23172805 polypeptide=Lus10033791 locus=Lus10033791.g ID=Lus10033791.BGIv1.0 annot-version=v1.0
MDPEQTFIRLQDRFSQVLTAKVRATLEYVYLFIAITLFSILVVMHANYVQQPGCSTELPGVEALDAQLIRIKITSAGLWSQNESEYSIEDVPDLNVVTDK
FEQPNVGTDDLALLASKFWHNWIGFSTRKGKLTLNFWRTDNELVEQQHESSSTESSKSVIDDSVTKTERETRSRLYMLVKNTLKIAIAHVNKKWHRRLSF
IWRFVLQISQGIQKLWNITGIRLNLDVPKWLRILHLDRANSFAVQWLEKKSKGFEPTYLYTMEKGYFLLPEEARLQHNIHTVNVTISAWHPCFGNRWQQL
LINRVVGYDTILMNSILSSPGHGYLYNFQTNEFYNLSYAQLPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQTRMLKFTVQLQHHARHHL
PTFQLIFVHVIESLVFVPIMIGILFFLFEFYDDQLLAFMVLILVWLCELFTLISVRTPISMKFFPRFFLLYFLVFHIYFFSYTYGFSYLALSTTAAFMQH
LILYFWNRFEVPALQRFMQNRRTQLQQHPDFHITSSTIFASTLHITRFNTRNPQGPLNAEMGVRPGSEQMPPVATTGIAEPAVGNNSVGEAESGAGAANV
GSMNSFSSLLLWILGGASYEGLNTFLSMFRDMRDHQGQVFAENQSRGGEQTTGEDVD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G60995 unknown protein Lus10033791
[exp]
0 1
AT1G70160 unknown protein Lus10010721
[exp]
1.4 0.9513
AT1G22620 ATSAC1 suppressor of actin 1, Phospho... Lus10014827
[exp]
7.2 0.9219
AT1G05940 CAT9 cationic amino acid transporte... Lus10042898
[exp]
7.3 0.8818
AT4G33430 SERK3, RKS10, E... RECEPTOR KINASES LIKE SERK 10,... Lus10020962
[exp]
7.5 0.9163
AT1G70160 unknown protein Lus10029209
[exp]
8.5 0.9063
AT3G22260 Cysteine proteinases superfami... Lus10010459
[exp]
8.7 0.8902
AT1G56560 A/N-InvA alkaline/neutral invertase A, ... Lus10031431
[exp]
8.9 0.8729
AT4G38360 LAZ1 LAZARUS 1, Protein of unknown ... Lus10022625
[exp]
10.0 0.8680
AT1G12360 KEU keule, Sec1/munc18-like (SM) p... Lus10032196
[exp]
11.5 0.8993
AT2G21120 Protein of unknown function (D... Lus10026280
[exp]
12.3 0.8991

Lus10033791 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.