Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23970 217 / 1e-70 Class I glutamine amidotransferase-like superfamily protein (.1) AT4G30550 202 / 1e-64 GGP3 gamma-glutamyl peptidase 3, Class I glutamine amidotransferase-like superfamily protein (.1) AT4G30530 184 / 6e-58 GGP1 gamma-glutamyl peptidase 1, Class I glutamine amidotransferase-like superfamily protein (.1) AT4G30540 183 / 2e-57 Class I glutamine amidotransferase-like superfamily protein (.1) AT2G23960 182 / 9e-57 Class I glutamine amidotransferase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014635 [exp] 427 / 2e-153 AT2G23970 233 / 8e-77 Class I glutamine amidotransferase-like superfamily protein (.1) Lus10019964 [exp] 206 / 4e-66 AT2G23970 279 / 6e-95 Class I glutamine amidotransferase-like superfamily protein (.1) Lus10015493 [exp] 94 / 1e-23 AT4G30550 96 / 8e-25 gamma-glutamyl peptidase 3, Class I glutamine amidotransferase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G078200 [exp] 287 / 2e-98 AT2G23970 211 / 1e-68 Class I glutamine amidotransferase-like superfamily protein (.1) Potri.018G102000 [exp] 229 / 2e-75 AT2G23970 308 / 1e-106 Class I glutamine amidotransferase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0014 [flax] [poplar] Glutaminase_I PF00117 [flax] [poplar] GATase Glutamine amidotransferase class-I
Representative CDS sequence Show only first row Show all	>Lus10033793 pacid=23172798 polypeptide=Lus10033793 locus=Lus10033793.g ID=Lus10033793.BGIv1.0 annot-version=v1.0 ATGGGAGGAAAGAAATTCGGGGTGCTGCTGTGCGCAGAGGATTCGGAATACGTGAAGAGGAAATACGGAGGGTATTTCGAGGTGTTCGTTGGGATGCTGG CAGAGGAGGGGGATAGTTGGCAACTGTTCAAGGTCGTCGCCGGCGAGTTTCCCGACGACGCCGAATTAGACGGATTCGACGGGTTCGTGATCACCGGGAG CTGCAATGACGCCCACTCAAACGAGGAATGGATCTGCCGCCTCCTCAAACTGCTCGTAACATTGAACTCTCTCAACAAGAAGCTTCTCGGCATTTGCTTC GGCCATCAGATATTGGGGCGGGCGATAGGAGGGGAAACAGGGAGGAACAAGGCAGGATGGGACATAGGTGTACGAAGCCTGAACCTATCTTCTTCAACAT CCAATCTCTTCACAGCCCTTCAACTCCCTACTGCTCTCTCCATCATCGAGTGCCATCGCGACGAGGTGAGGGAACTGCCGGAAGAAGCAGAGGTGATGGC GTGGTCGGAGAAGACAGGGATAGAAATGTTTAGGTATGGGAAGAATATGATGGGGATACAAGGACATCCAGAGTACAACAAAGACATTCTGTCTCACTTG ATCGATCGTCTCCACCAGAGGAATTTCATCCTGTCTGGGTATGCTGATGAGCTCAAGGAGAAGCTTGTCGAGATTGAACATGTTCATGCCGATTCTTGGA AGAAGTTCTGCATCGGCTTCCTCAAGGATAAGCTCGTTGCTGCTTTAAATTGA
AA sequence Show only first row Show all	>Lus10033793 pacid=23172798 polypeptide=Lus10033793 locus=Lus10033793.g ID=Lus10033793.BGIv1.0 annot-version=v1.0 MGGKKFGVLLCAEDSEYVKRKYGGYFEVFVGMLAEEGDSWQLFKVVAGEFPDDAELDGFDGFVITGSCNDAHSNEEWICRLLKLLVTLNSLNKKLLGICF GHQILGRAIGGETGRNKAGWDIGVRSLNLSSSTSNLFTALQLPTALSIIECHRDEVRELPEEAEVMAWSEKTGIEMFRYGKNMMGIQGHPEYNKDILSHL IDRLHQRNFILSGYADELKEKLVEIEHVHADSWKKFCIGFLKDKLVAALN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23970			Class I glutamine amidotransfe...		Lus10033793 [exp]	0	1
AT1G19050		ARR7	response regulator 7 (.1)		Lus10042938 [exp]	4.6	0.7664
AT1G04240	AUX_IAA	IAA3, SHY2	SHORT HYPOCOTYL 2, indole-3-ac...		Lus10024853 [exp]	6.0	0.8008
AT3G61260			Remorin family protein (.1)		Lus10017811 [exp]	6.6	0.7855
AT1G10740			alpha/beta-Hydrolases superfam...		Lus10030586 [exp]	13.7	0.7596
AT5G01970			unknown protein		Lus10035153 [exp]	16.1	0.6964
AT5G50000			Protein kinase superfamily pro...		Lus10002368 [exp]	21.4	0.6957
AT5G63640			ENTH/VHS/GAT family protein (....		Lus10012506 [exp]	24.6	0.7390
AT4G38840			SAUR-like auxin-responsive pro...		Lus10038193 [exp]	27.0	0.7327
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Lus10011290 [exp]	30.3	0.7531
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Lus10004630 [exp]	34.1	0.6942

Compare expression of checked genes

Lus10033793 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.