Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39960 254 / 9e-82 GTP binding;GTP binding (.1) AT3G12080 66 / 1e-12 EMB2738 embryo defective 2738, GTP-binding family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027371 [exp] 60 / 2e-10 AT3G12080 874 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2) Lus10002557 [exp] 60 / 2e-10 AT3G12080 869 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2) Lus10014634 [exp] 0 / 1 AT5G39960 634 / 0.0 GTP binding;GTP binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G230600 [exp] 276 / 6e-90 AT5G39960 787 / 0.0 GTP binding;GTP binding (.1) Potri.009G054200 [exp] 58 / 6e-10 AT3G12080 813 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00009 [flax] [poplar] GTP_EFTU Elongation factor Tu GTP binding domain
Representative CDS sequence Show only first row Show all	>Lus10033794 pacid=23172861 polypeptide=Lus10033794 locus=Lus10033794.g ID=Lus10033794.BGIv1.0 annot-version=v1.0 ATGAGGGCTCACGTGATTGCTTTGGTACTTGATGCAGAACAGCAGAAGCTAGACGTAGTAGTTATAGCAAGACGGGCAGTGGAAGAAGGGCGTGGATTGG TTGTCGTGGTGAACAAGATGGATCTTCTTAAAGGAAAGCTATACGATAAGGTCATGGAAATTGTTCCCCTGGAAATTCAGACAGTTATACCCCAGGTTAC AGGAATACCGGCTGTATTCACTTCAGCAATAGAAGGTAAAGGTAGGATACCTGTGATGCGGCAGGTGATCGAGACGTACGGAAAATGGTGCTCAAGATTA TTGACAGCTAGGTTGAACCGTTGGATACGCAAGGTTATGAGTAGGCATTCCTGGAAAGGCGAGGGGACGCAACCAAAGATAAAGTACCTGACCCAGGTGA AGGCTCGTCCACCTACATTTGTTGCCTTCACAAGTGGGAAGAAGCAGATTTCGGAATCGGAGATTCGGTTCCTGACGAAGTCGTTGAAGGAAGATTTCGA TTTAGGTGTGTTCCTAAGAGCAATGGGAGTTGCCAAAGCAGCAGCAGCAGTAGCAGCAGCAGGTATTCCAAAACTACTGGCAGGACGAGGATTATCGGAG TAG
AA sequence Show only first row Show all	>Lus10033794 pacid=23172861 polypeptide=Lus10033794 locus=Lus10033794.g ID=Lus10033794.BGIv1.0 annot-version=v1.0 MRAHVIALVLDAEQQKLDVVVIARRAVEEGRGLVVVVNKMDLLKGKLYDKVMEIVPLEIQTVIPQVTGIPAVFTSAIEGKGRIPVMRQVIETYGKWCSRL LTARLNRWIRKVMSRHSWKGEGTQPKIKYLTQVKARPPTFVAFTSGKKQISESEIRFLTKSLKEDFDLGVFLRAMGVAKAAAAVAAAGIPKLLAGRGLSE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39960			GTP binding;GTP binding (.1)		Lus10033794 [exp]	0	1
AT2G39260			binding;RNA binding (.1)		Lus10030801 [exp]	3.2	0.8540
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10025133 [exp]	5.7	0.8375
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10019568 [exp]	7.7	0.7999
AT1G01540			Protein kinase superfamily pro...		Lus10036386 [exp]	11.0	0.8085
AT5G65550			UDP-Glycosyltransferase superf...		Lus10028863 [exp]	11.6	0.8393
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10020736 [exp]	11.7	0.8369
AT1G44750		ATPUP11	purine permease 11 (.1.2.3)		Lus10012606 [exp]	12.0	0.8207
AT3G03980			NAD(P)-binding Rossmann-fold s...		Lus10002628 [exp]	12.4	0.8217
AT1G66980		GDPDL2, SNC4	Glycerophosphodiester phosphod...		Lus10027085 [exp]	13.0	0.8213
					Lus10017219 [exp]	13.0	0.8226

Compare expression of checked genes

Lus10033794 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.