Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04750 343 / 9e-114 Major facilitator superfamily protein (.1) AT1G54730 330 / 4e-109 Major facilitator superfamily protein (.1.2.3) AT4G04760 318 / 2e-104 Major facilitator superfamily protein (.1) AT2G48020 317 / 7e-104 Major facilitator superfamily protein (.1.2) AT3G05165 317 / 1e-103 Major facilitator superfamily protein (.1.2.3.4.5) AT3G05150 310 / 5e-101 Major facilitator superfamily protein (.1) AT5G18840 305 / 4e-99 Major facilitator superfamily protein (.1) AT3G20460 302 / 1e-97 Major facilitator superfamily protein (.1) AT3G05160 298 / 1e-96 Major facilitator superfamily protein (.1.2) AT5G27360 296 / 8e-96 SFP2 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018957 [exp] 626 / 0 AT4G04750 326 / 2e-106 Major facilitator superfamily protein (.1) Lus10033815 [exp] 600 / 0 AT1G54730 305 / 8e-100 Major facilitator superfamily protein (.1.2.3) Lus10000924 [exp] 481 / 4e-168 AT4G04750 371 / 1e-124 Major facilitator superfamily protein (.1) Lus10002258 [exp] 400 / 4e-133 AT1G54730 319 / 2e-101 Major facilitator superfamily protein (.1.2.3) Lus10035354 [exp] 349 / 3e-116 AT1G54730 615 / 0.0 Major facilitator superfamily protein (.1.2.3) Lus10029960 [exp] 316 / 2e-102 AT1G54730 490 / 3e-170 Major facilitator superfamily protein (.1.2.3) Lus10029629 [exp] 310 / 4e-101 AT2G48020 661 / 0.0 Major facilitator superfamily protein (.1.2) Lus10033812 [exp] 310 / 4e-101 AT1G08930 499 / 1e-174 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Lus10033814 [exp] 310 / 7e-101 AT1G08920 466 / 8e-162 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G040000 [exp] 358 / 6e-120 AT1G54730 429 / 2e-147 Major facilitator superfamily protein (.1.2.3) Potri.013G027700 [exp] 357 / 2e-119 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.005G037000 [exp] 345 / 1e-114 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.005G039900 [exp] 344 / 4e-114 AT1G08920 461 / 1e-159 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027500 [exp] 343 / 6e-114 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.002G212900 [exp] 313 / 5e-102 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.014G136600 [exp] 310 / 5e-101 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.013G027800 [exp] 301 / 2e-97 AT5G27360 405 / 6e-138 Major facilitator superfamily protein (.1) Potri.010G026500 [exp] 300 / 4e-97 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1) Potri.007G024300 [exp] 280 / 2e-89 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10033795 pacid=23172752 polypeptide=Lus10033795 locus=Lus10033795.g ID=Lus10033795.BGIv1.0 annot-version=v1.0 ATGGGAATGAAGGAAATCATGATTGTTGAAGAGAAAGCTCAAGCTACAGAGCCACTCCTCCGTCCTTTTCCTGATCAGTACAATAACAAGAATAACAAGA ATGTTGGCCGCAATTCCCCATTTACTCCAACTCTTGTTTTCAGTGTCTTCACCGTTGCTTGTGGTTGCTTTACTACTGGATGCATTGTGGGATATTCCTC ACCGGTGGAGTATGCAATTGTGGAAGAATTGGGCCTCTCAGTTGCAGAGTACACGGTGTTTGGATCAATGATGATAGTTGGGGGGCTTTTTGCTGCCGTC GGTGGTGGAAAGATTGCAGAAACGCTGGTGGGTGTGGCTGGATTGTACGTTGTTGGATGGCTTACCATTGCATCTGCAAAGGGTGCTTGGCAACTTGACC TTGGGAGACTGGTTCAGGGAATTGGATCAACCTTGACGCTTTACCTGACACCTCTTTATGTAGCAGAAATATCACCCAAGAATGTCAGGGGAACTGCTGT ATCCATGTCTCAGCTGACAATCATGGTCGGCATTTCATTCACATTCATAGTTGGTTCCGTAATCAACTGGCGTACCATGGCACTAATTGGAGCGGCTTCA GGTGTACTGCAGTTGTTTCTTACACTTTTTGTACCAGAATCTCCTAGGTGGCTGGCTAAAACTGATAAGGGCGAGCAGTTTGAAGCTGCCTTGCTGCGGC TGAGAGGAGTAAACGAAGATATTTCTTGGGAAATAGAGGAAATCAAGGAGTATACCAAAACAATTCAAAGAATTTCTCAGGATAGCAGCTTCTTTAGTCT GTTTCAGAAGCAGTATGCAATTCCATTACTTGTTGCAAATGGGTTGTTAGTGCTAGAACAGCTTGCAGGGATGAACTCGTACATGTTCTATACGGGTGCC ATTTTCGTTTCAGCAGGTATCTCAAACACTATAGGGTTCTTGGCAGTATCAGCTGCTCAGCTTACTGGGGCTATATTAACTACAGCATTGCTGGACAGAT ACGGAAGAAGACCACTTTTACTGGCGTCAGCTTTGGGGACATGTTCTGCTAGTTTGCTCACTGCACTCTCTTACATCCTAAAGATATTCATGGGGACTGT GTCACTTGGGAATGGAATTTCCTGGATCATAGTTGCGGAGATATTTCCACAGAACATAAAAGGTGCAGCAGGGAGCATGTGCATTCTGTCCAGCAACATC TCCTCTCTGCTAGTGACACTCTCCTTCCAGTCTTTGCTCCAATGGAGCCCTTCAGGGACGTTCTTGATATATGCAGGTGTAAGTGCTGTGGCAATCATAT TTGTGGCCAAGTTGGTTCCTGAAACTAAAGGAAGAACTCTGGAAGAAATCCAATCCTCTTTTACCCACAAATGA
AA sequence Show only first row Show all	>Lus10033795 pacid=23172752 polypeptide=Lus10033795 locus=Lus10033795.g ID=Lus10033795.BGIv1.0 annot-version=v1.0 MGMKEIMIVEEKAQATEPLLRPFPDQYNNKNNKNVGRNSPFTPTLVFSVFTVACGCFTTGCIVGYSSPVEYAIVEELGLSVAEYTVFGSMMIVGGLFAAV GGGKIAETLVGVAGLYVVGWLTIASAKGAWQLDLGRLVQGIGSTLTLYLTPLYVAEISPKNVRGTAVSMSQLTIMVGISFTFIVGSVINWRTMALIGAAS GVLQLFLTLFVPESPRWLAKTDKGEQFEAALLRLRGVNEDISWEIEEIKEYTKTIQRISQDSSFFSLFQKQYAIPLLVANGLLVLEQLAGMNSYMFYTGA IFVSAGISNTIGFLAVSAAQLTGAILTTALLDRYGRRPLLLASALGTCSASLLTALSYILKIFMGTVSLGNGISWIIVAEIFPQNIKGAAGSMCILSSNI SSLLVTLSFQSLLQWSPSGTFLIYAGVSAVAIIFVAKLVPETKGRTLEEIQSSFTHK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04750			Major facilitator superfamily ...		Lus10033795 [exp]	0	1
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10023626 [exp]	1.7	0.9385
AT1G74875			unknown protein		Lus10023768 [exp]	2.4	0.9037
AT2G47240		CER8, LACS1	LONG-CHAIN ACYL-COA SYNTHASE 1...		Lus10032840 [exp]	2.4	0.9370
AT3G12080		EMB2738	embryo defective 2738, GTP-bin...		Lus10002557 [exp]	3.5	0.9293
AT5G65380			MATE efflux family protein (.1...		Lus10024945 [exp]	3.9	0.9188
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Lus10040644 [exp]	5.3	0.9231
AT5G47180			Plant VAMP (vesicle-associated...		Lus10011004 [exp]	6.9	0.8805
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10040252 [exp]	7.9	0.9023
AT5G02890			HXXXD-type acyl-transferase fa...		Lus10040156 [exp]	8.0	0.8719
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Lus10018268 [exp]	8.9	0.9003

Compare expression of checked genes

Lus10033795 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.