Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14820 671 / 0 MEL3, NPY2 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) AT5G67440 525 / 0 MEL2, NPY3 NAKED PINS IN YUC MUTANTS 3, MAB4/ENP/NPY1-LIKE 2, Phototropic-responsive NPH3 family protein (.1.2) AT4G37590 524 / 1e-180 MEL1, NPY5 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) AT2G23050 503 / 4e-174 MEL4, NPY4 NAKED PINS IN YUC MUTANTS 4, MAB4/ENP/NPY1-LIKE 4, Phototropic-responsive NPH3 family protein (.1) AT4G31820 448 / 3e-151 MAB4, ENP, NPY1 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) AT1G67900 421 / 6e-140 Phototropic-responsive NPH3 family protein (.1.2.3) AT3G26490 348 / 4e-112 Phototropic-responsive NPH3 family protein (.1) AT5G03250 345 / 6e-111 Phototropic-responsive NPH3 family protein (.1) AT5G47800 344 / 8e-111 Phototropic-responsive NPH3 family protein (.1) AT1G30440 338 / 3e-107 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014632 [exp] 1069 / 0 AT2G14820 741 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Lus10019297 [exp] 520 / 7e-179 AT4G37590 569 / 0.0 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) Lus10011525 [exp] 517 / 5e-178 AT4G37590 579 / 0.0 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) Lus10042414 [exp] 499 / 3e-170 AT4G31820 612 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Lus10026255 [exp] 454 / 3e-148 AT4G31820 557 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Lus10000443 [exp] 430 / 6e-143 AT1G67900 797 / 0.0 Phototropic-responsive NPH3 family protein (.1.2.3) Lus10039099 [exp] 369 / 1e-119 AT5G47800 655 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10015871 [exp] 343 / 8e-110 AT5G03250 666 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10009292 [exp] 343 / 1e-109 AT5G03250 670 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G295600 [exp] 873 / 0 AT2G14820 771 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.009G089500 [exp] 841 / 0 AT2G14820 732 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.005G146400 [exp] 665 / 0 AT2G14820 671 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.018G018600 [exp] 533 / 0 AT4G31820 630 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Potri.006G264300 [exp] 511 / 5e-175 AT4G31820 623 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Potri.010G046800 [exp] 438 / 1e-146 AT1G67900 861 / 0.0 Phototropic-responsive NPH3 family protein (.1.2.3) Potri.008G186100 [exp] 432 / 3e-144 AT1G67900 833 / 0.0 Phototropic-responsive NPH3 family protein (.1.2.3) Potri.017G048200 [exp] 371 / 5e-120 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.016G003700 [exp] 368 / 1e-119 AT5G47800 705 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G112600 [exp] 369 / 5e-119 AT5G64330 989 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain CL0033 [flax] [poplar] PF03000 [flax] [poplar] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Lus10033796 pacid=23172844 polypeptide=Lus10033796 locus=Lus10033796.g ID=Lus10033796.BGIv1.0 annot-version=v1.0 ATGAAGTTTATGAAACTTGGATCCAAACCTGATTCCTTTCAGACCCATGAAGACAATATTTGGTTTGTGGCTACTGAGTTAGCCACTGATGTCACTGTTA CCGTTGGGGATTCCAAATTTTATCTTCACAAGTTTCCTTTACTGTCGAAAAGCGCCCGTTTGCAGAAGTATGTCGTGACAAGTAATGGAGAAAACAGCGA CGAAGTTGACATTTCTGATATCCCTGGAGGGCCTGCTGCATTCGAGATCTGCGCCAAGTTTTGTTACGGGATGACTGTAACTCTCAATGCCTACAATGTC GTTGCTGCAAGATGTGCTGCCGATTACCTTGAAATGCACGAGTCCGTTGAGAAAGGCAACCTCATTTACAAAATCGACGTGTTCCTTAGCTCGAGTATTT TCCGCAGCTGGAAAGATTCCATCATCGTTCTTCGAACTACCAATTCCATGTTGCCATTATCTGAAGACCTCAAGATTGTTAGCCACTGCATTGAAGCGAT AGCTACCAGAGCCTGTGTTGATCCTTCAAGAGTTGATTGGTCCTACACGTATAATAGGAAGAAACTCCCCGAGGAAAATGGAGATGCAGCAAACTTGAAC GGGGTAAGAAGCCGTTTAGTGCCAGCAGACTGGTGGGTTGAGGACCTGTGTGAGCTCGGCATTGACTTGTACAAGCGTGTTCTCATGACAATTCGAGCTA AGGCAGTACTACCTCATGAAGTGATTGGAGAAGCGTTGAAAGCTTACTCTTACAGAAGATTGCCAGGCATCAGCAAGGGTGTTATCCAGTCTGAAGAACG TACAAAGTATCGATCAACAGTTGACACAATCGTGATGCTTTTGCCCGGAGAGCGAGGCAGTGTCTCGAGTAGCTTTCTGCTCAAGTTATTAAAAGCAGCC ATTTCTGTAGGCTCTGGTAATCTGACCAAGGAACAACTAGTAAGGAAAATCGGACTGCAGCTAGAGTCGGTTTCAGTGAATGACCTTCTGATACGAGCAA GCGAAGAGGAAAGCATGATGTATGATGTTGACATAGTTCAGAAAATTGTGCTGGGATTTCTAATGCAAGACCAGTTTGCTGAAGTTAATGAATCAAAAGT TCACGAGGTTCAGGAGATGATGCAAGGACCTGGGATATTATCAGATGCATCAAAACTCATGGTAGCGAAAACAATCGATGGATACCTTGCTGAGATTGCA AAGGATCCCAAGCTACCAGTGTTGAAGTTCATCGAGATTGCTGAGATGGTGTCTGGTGTCTCTAGGCCTGTACACGACGCTCTATATCGTGCCATTGACA CGTACCTCAAGGAACATCCAGGTATCAGCAAGAGCGAGAGAAAGAAGATATGCAAGCTGATGGACTGCAAGAAACTATCAGTTGATGCATGCATGCACGC AGTACAAAACGAGAGGCTTCCGATGCGGGTAGTAGTTCAAGTACTCTTCTTTGAACAGGTGAGAATATCTGCAACATCAGGATGTAGCACTCCTGACCTG CCAATGAGCATCAGGGACCTAAACAATGGCTCTCAGAGGAGCTCAAGATCAGCTGCTACAAACCCAGATGAGGATTGGGACGGATTAGCCACAGCGGAGG AGCTGAAGGCACTGAAAGCTGAGGTAGCAGCTTTAAGAATGAGGAATGGAGTTGGTAGTAGAAGTAGCAGTAGCAATAACATGGATAGAGGAGGTGCTAG CTACAGAATGAAAGGGTTGATGAAATCAAAGAAAGTGTTTACAAAGCTGTGGTCAAGCAAAGGAGAGAAAGGTGGGGAGCAGAGTGGGTCAGATTCATCT GAGAGTCTTGGATCAACCACTAACGGTGGCGCCGAAGAAGCTAAATCAACACCTTCAAGAAACAGACGAAGATCAGTGTCTTGA
AA sequence Show only first row Show all	>Lus10033796 pacid=23172844 polypeptide=Lus10033796 locus=Lus10033796.g ID=Lus10033796.BGIv1.0 annot-version=v1.0 MKFMKLGSKPDSFQTHEDNIWFVATELATDVTVTVGDSKFYLHKFPLLSKSARLQKYVVTSNGENSDEVDISDIPGGPAAFEICAKFCYGMTVTLNAYNV VAARCAADYLEMHESVEKGNLIYKIDVFLSSSIFRSWKDSIIVLRTTNSMLPLSEDLKIVSHCIEAIATRACVDPSRVDWSYTYNRKKLPEENGDAANLN GVRSRLVPADWWVEDLCELGIDLYKRVLMTIRAKAVLPHEVIGEALKAYSYRRLPGISKGVIQSEERTKYRSTVDTIVMLLPGERGSVSSSFLLKLLKAA ISVGSGNLTKEQLVRKIGLQLESVSVNDLLIRASEEESMMYDVDIVQKIVLGFLMQDQFAEVNESKVHEVQEMMQGPGILSDASKLMVAKTIDGYLAEIA KDPKLPVLKFIEIAEMVSGVSRPVHDALYRAIDTYLKEHPGISKSERKKICKLMDCKKLSVDACMHAVQNERLPMRVVVQVLFFEQVRISATSGCSTPDL PMSIRDLNNGSQRSSRSAATNPDEDWDGLATAEELKALKAEVAALRMRNGVGSRSSSSNNMDRGGASYRMKGLMKSKKVFTKLWSSKGEKGGEQSGSDSS ESLGSTTNGGAEEAKSTPSRNRRRSVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G14820		MEL3, NPY2	NAKED PINS IN YUC MUTANTS 2, M...		Lus10033796 [exp]	0	1
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10013788 [exp]	1.4	0.9617
AT3G56510			RNA-binding (RRM/RBD/RNP motif...		Lus10032099 [exp]	4.2	0.9312
AT3G01840			Protein kinase superfamily pro...		Lus10041574 [exp]	6.0	0.9528
AT1G65900			unknown protein		Lus10007381 [exp]	7.5	0.9452
AT3G54250			GHMP kinase family protein (.1...		Lus10034147 [exp]	7.7	0.9523
AT5G24330		SDG34, ATXR6	SET DOMAIN PROTEIN 34, ARABIDO...		Lus10007782 [exp]	8.1	0.9325
AT2G33840			Tyrosyl-tRNA synthetase, class...		Lus10032773 [exp]	8.8	0.9405
AT2G29570		ATPCNA2, PCNA2	A. THALIANA PROLIFERATING CELL...		Lus10001197 [exp]	10.5	0.9300
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Lus10038635 [exp]	10.6	0.9264
AT1G23170			Protein of unknown function DU...		Lus10021774 [exp]	12.4	0.9316

Compare expression of checked genes

Lus10033796 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.