Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27730 100 / 2e-25 C2H2ZnF ZAT10, STZ salt tolerance zinc finger (.1) AT5G04340 100 / 2e-25 C2H2ZnF ZAT6, CZF2, C2H2 COLD INDUCED ZINC FINGER PROTEIN 2, zinc finger of Arabidopsis thaliana 6 (.1) AT5G43170 98 / 6e-25 C2H2ZnF AZF3 zinc-finger protein 3 (.1) AT5G67450 99 / 1e-24 C2H2ZnF AZF1 zinc-finger protein 1 (.1) AT3G19580 96 / 2e-23 C2H2ZnF AZF2 zinc-finger protein 2 (.1.2) AT3G49930 91 / 4e-22 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT2G28200 83 / 1e-18 C2H2ZnF C2H2-type zinc finger family protein (.1) AT1G49900 85 / 2e-18 C2H2ZnF C2H2 type zinc finger transcription factor family (.1) AT3G60580 80 / 2e-17 C2H2ZnF C2H2-like zinc finger protein (.1) AT5G03510 80 / 2e-17 C2H2ZnF C2H2-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014631 [exp] 251 / 8e-84 AT1G27730 144 / 4e-42 salt tolerance zinc finger (.1) Lus10032848 [exp] 109 / 9e-29 AT1G27730 149 / 1e-43 salt tolerance zinc finger (.1) Lus10004316 [exp] 105 / 5e-27 AT5G04340 134 / 3e-38 COLD INDUCED ZINC FINGER PROTEIN 2, zinc finger of Arabidopsis thaliana 6 (.1) Lus10028173 [exp] 79 / 9e-17 AT1G02040 124 / 4e-32 C2H2-type zinc finger family protein (.1) Lus10018696 [exp] 75 / 3e-16 AT3G49930 130 / 6e-38 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10042872 [exp] 76 / 1e-15 AT2G45120 124 / 7e-32 C2H2-like zinc finger protein (.1) Lus10030330 [exp] 74 / 1e-15 AT2G37430 125 / 2e-36 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10022610 [exp] 71 / 1e-14 AT2G28200 147 / 1e-43 C2H2-type zinc finger family protein (.1) Lus10024763 [exp] 72 / 3e-14 AT1G02030 122 / 9e-31 C2H2-like zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G295500 [exp] 151 / 4e-45 AT1G27730 144 / 2e-42 salt tolerance zinc finger (.1) Potri.009G089400 [exp] 145 / 2e-42 AT3G19580 120 / 6e-33 zinc-finger protein 2 (.1.2) Potri.014G017300 [exp] 124 / 2e-34 AT1G27730 189 / 4e-60 salt tolerance zinc finger (.1) Potri.002G119300 [exp] 122 / 2e-33 AT1G27730 186 / 8e-59 salt tolerance zinc finger (.1) Potri.009G027700 [exp] 74 / 6e-16 AT5G59820 126 / 5e-37 RESPONSIVE TO HIGH LIGHT 41, C2H2-type zinc finger family protein (.1) Potri.009G004800 [exp] 75 / 1e-15 AT2G28200 182 / 7e-56 C2H2-type zinc finger family protein (.1) Potri.006G121600 [exp] 74 / 1e-15 AT5G04390 136 / 4e-38 C2H2-type zinc finger family protein (.1) Potri.002G143600 [exp] 75 / 3e-15 AT1G02040 124 / 1e-31 C2H2-type zinc finger family protein (.1) Potri.014G066200 [exp] 75 / 3e-15 AT1G02040 129 / 1e-33 C2H2-type zinc finger family protein (.1) Potri.004G216900 [exp] 74 / 3e-15 AT2G28200 172 / 4e-52 C2H2-type zinc finger family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033798 pacid=23172870 polypeptide=Lus10033798 locus=Lus10033798.g ID=Lus10033798.BGIv1.0 annot-version=v1.0 ATGGCCTTGGAAGCTCTCAACTCCCCGACCACCGCCTCCACCTCCAAATTCAACCACCAGCAGGATGATTCATGGAGCAAGCGCAAGCGTTCTAACCGCC CCAGATCTTCCGACGATGAGTATCTCGCCTTCTGCCTACTCATGCTCGCCCGCGGCAAAAACAACAATCCCGATTCCAATTCCAATTTCAATTTCAAACC CTTGCCCACGCCGCCGCCGCTCCAGACCTCTTCGAATCAACTTTCTTACAGTTGTAAAGTCTGCGACAAATCCTTCTCCACCTTCCAAGCTCTCGGAGGT CACAAAGCAAGCCACCGGAAGTCGTCCAACTCCGCCGCGGATCAGAATCCTACTCATCCTCCTCCTGCTTCCTCCGCTGAGATTCCTTCCACATCCAACA ACGCCGCCAGGACACACGAGTGTTCCATCTGTCATAAGACCTTCTCCTGTGGCCAGGCTCTCGGCGGCCATAAGCGATGCCACTACGAAGGCACTATCAA CCACCACAAAAACAGTACTACTACTACCCTCACTACTACTACTACTCAGAGCCAGAGTCGAAGTCAAAGCCGATGCGATGGGTTAGGGTTTGAGTTTGAC CTCAATTTGCCTGCCTCGCCTGAACTGGGATCGGGAGAAGGTAGCGGCGCCGCCAAGAAAAGCAGCAGAGAGGAAGAGGTGGAAAGCGCTCTCCCCGTAA AGAAACCAAGATTGTCTCTTACCCTACCAGTTCCCCACTCCGATTAG
AA sequence Show only first row Show all	>Lus10033798 pacid=23172870 polypeptide=Lus10033798 locus=Lus10033798.g ID=Lus10033798.BGIv1.0 annot-version=v1.0 MALEALNSPTTASTSKFNHQQDDSWSKRKRSNRPRSSDDEYLAFCLLMLARGKNNNPDSNSNFNFKPLPTPPPLQTSSNQLSYSCKVCDKSFSTFQALGG HKASHRKSSNSAADQNPTHPPPASSAEIPSTSNNAARTHECSICHKTFSCGQALGGHKRCHYEGTINHHKNSTTTTLTTTTTQSQSRSQSRCDGLGFEFD LNLPASPELGSGEGSGAAKKSSREEEVESALPVKKPRLSLTLPVPHSD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27730	C2H2ZnF	ZAT10, STZ	salt tolerance zinc finger (.1...		Lus10033798 [exp]	0	1
AT5G17350			unknown protein		Lus10034636 [exp]	2.4	0.8971
AT1G47750		PEX11A	peroxin 11A (.1)		Lus10029260 [exp]	4.0	0.8965
AT1G01550		BPS1	BYPASS 1, Protein of unknown f...		Lus10039581 [exp]	8.4	0.8720
AT3G12660		FLA14	FASCICLIN-like arabinogalactan...		Lus10024089 [exp]	8.8	0.8126
AT1G55910		ZIP11	zinc transporter 11 precursor ...		Lus10004413 [exp]	10.1	0.8381
AT3G07870			F-box and associated interacti...		Lus10038606 [exp]	13.4	0.8763
					Lus10019272 [exp]	14.1	0.8533
AT1G70140		ATFH8	formin 8 (.1)		Lus10010724 [exp]	14.3	0.7853
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10024087 [exp]	14.8	0.8337
AT1G17730		CHMP1B, VPS46.1	CHARGED MULTIVESICULAR BODY PR...		Lus10006868 [exp]	15.2	0.8235

Compare expression of checked genes

Lus10033798 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.