Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02260 90 / 4e-23 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1) AT2G39700 89 / 1e-22 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT3G55500 84 / 7e-21 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1) AT5G05290 82 / 2e-20 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1) AT2G37640 81 / 1e-19 ATHEXPALPHA1.9, ATEXP3, ATEXPA3, EXP3 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) AT5G39300 77 / 3e-18 ATHEXPALPHA1.18, ATEXP25, ATEXPA25 EXPANSIN 25, expansin A25 (.1) AT5G39280 77 / 3e-18 ATEXP23, ATHEXPALPHA1.17, ATEXPA23 EXPANSIN 23, expansin A23 (.1) AT5G56320 77 / 3e-18 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1) AT5G39290 76 / 1e-17 ATHEXPALPHA1.16, ATEXP26 EXPANSIN 26, expansin A26 (.1) AT2G40610 75 / 2e-17 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023902 [exp] 184 / 2e-61 AT5G02260 151 / 1e-46 expansin A9 (.1) Lus10014406 [exp] 185 / 9e-60 AT3G55500 304 / 7e-104 EXPANSIN 16, expansin A16 (.1) Lus10040801 [exp] 85 / 5e-21 AT2G39700 456 / 1e-164 expansin A4 (.1) Lus10016533 [exp] 84 / 5e-21 AT2G39700 456 / 9e-165 expansin A4 (.1) Lus10023407 [exp] 84 / 8e-21 AT2G39700 445 / 3e-160 expansin A4 (.1) Lus10040286 [exp] 84 / 1e-20 AT2G39700 447 / 4e-161 expansin A4 (.1) Lus10027740 [exp] 83 / 2e-20 AT5G02260 265 / 2e-89 expansin A9 (.1) Lus10012747 [exp] 82 / 5e-20 AT5G39280 317 / 1e-109 EXPANSIN 23, expansin A23 (.1) Lus10024388 [exp] 81 / 1e-19 AT2G37640 430 / 3e-154 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G097500 [exp] 124 / 4e-36 AT2G39700 301 / 6e-103 expansin A4 (.1) Potri.016G098700 [exp] 95 / 6e-25 AT2G39700 283 / 4e-96 expansin A4 (.1) Potri.008G057100 [exp] 91 / 2e-23 AT2G39700 459 / 6e-166 expansin A4 (.1) Potri.010G202500 [exp] 89 / 1e-22 AT2G39700 473 / 2e-171 expansin A4 (.1) Potri.009G031800 [exp] 89 / 1e-22 AT2G39700 453 / 1e-163 expansin A4 (.1) Potri.006G086100 [exp] 89 / 1e-22 AT2G37640 435 / 2e-156 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) Potri.001G240900 [exp] 87 / 4e-22 AT2G39700 449 / 6e-162 expansin A4 (.1) Potri.013G154700 [exp] 79 / 4e-19 AT2G40610 348 / 2e-122 expansin A8 (.1) Potri.006G108000 [exp] 78 / 9e-19 AT2G40610 379 / 2e-134 expansin A8 (.1) Potri.004G208300 [exp] 79 / 1e-18 AT4G38210 357 / 2e-124 EXPANSIN 20, expansin A20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10033801 pacid=23172800 polypeptide=Lus10033801 locus=Lus10033801.g ID=Lus10033801.BGIv1.0 annot-version=v1.0 ATGCAGGAAGAGTGGGGGAATGAGGTACACAATGATGGAAACCAGTGGTTCTACGAGGTCGTAGTTTCGAATGTCGGAGGGTCCGCAGACATCGTGGCCG TCCAAGTGAAGGTCGACGACAAACTCCAGAGGATATCTTTGGATCACAATTGGGGCGCCACTTGGAAAACTGGGTTTCCTTTGCAAGGCAAGTCGTTGAG CTTCAGGGTTCGAGGTAGCGATGGAAGGTACTCGACTTCTCCACACGCCGTCCCGAGTAATTGGCAGTTTGGTCAGACTTTTGAAGGCAAGAACTTCAAA TTGAAGAATGGAAGAAGAAAGGAGTTGGGCTAG
AA sequence Show only first row Show all	>Lus10033801 pacid=23172800 polypeptide=Lus10033801 locus=Lus10033801.g ID=Lus10033801.BGIv1.0 annot-version=v1.0 MQEEWGNEVHNDGNQWFYEVVVSNVGGSADIVAVQVKVDDKLQRISLDHNWGATWKTGFPLQGKSLSFRVRGSDGRYSTSPHAVPSNWQFGQTFEGKNFK LKNGRRKELG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02260		ATHEXPALPHA1.10...	expansin A9 (.1)		Lus10033801 [exp]	0	1
AT3G58480			calmodulin-binding family prot...		Lus10016219 [exp]	1.4	0.8445
AT5G65520			Tetratricopeptide repeat (TPR)...		Lus10025714 [exp]	2.0	0.8274
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Lus10013477 [exp]	3.5	0.7961
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10014885 [exp]	4.0	0.7914
AT1G51940			protein kinase family protein ...		Lus10027677 [exp]	5.3	0.7279
AT1G60200			splicing factor PWI domain-con...		Lus10013003 [exp]	7.1	0.7626
AT5G41010		NRPE12, NRPD12,...	DNA directed RNA polymerase, 7...		Lus10030353 [exp]	11.5	0.7753
AT1G80100		AHP6	histidine phosphotransfer prot...		Lus10011487 [exp]	15.5	0.7420
AT1G79070			SNARE-associated protein-relat...		Lus10031794 [exp]	15.5	0.6243
AT4G00850		GIF3	GRF1-interacting factor 3 (.1)		Lus10032892 [exp]	15.9	0.7787

Compare expression of checked genes

Lus10033801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.