Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21540 835 / 0 transducin family protein / WD-40 repeat family protein (.1) AT5G16750 102 / 3e-22 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT5G13480 88 / 1e-17 FY Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G25150 86 / 4e-17 TAF5 TBP-associated factor 5 (.1) AT5G23430 84 / 2e-16 Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G49660 81 / 2e-16 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 80 / 4e-15 Transducin/WD40 repeat-like superfamily protein (.1) AT4G15900 78 / 8e-15 PRL1 pleiotropic regulatory locus 1 (.1) AT3G16650 75 / 7e-14 Transducin/WD40 repeat-like superfamily protein (.1) AT1G62020 74 / 3e-13 Coatomer, alpha subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023903 [exp] 1123 / 0 AT3G21540 1223 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10012475 [exp] 888 / 0 AT3G21540 1094 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10020214 [exp] 99 / 5e-21 AT5G13480 738 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10026837 [exp] 96 / 3e-20 AT5G13480 759 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10001301 [exp] 92 / 6e-19 AT5G16750 1159 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) Lus10003487 [exp] 89 / 8e-19 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 88 / 1e-18 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10007449 [exp] 90 / 3e-18 AT5G25150 957 / 0.0 TBP-associated factor 5 (.1) Lus10024447 [exp] 87 / 2e-17 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G121100 [exp] 949 / 0 AT3G21540 1246 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.018G020200 [exp] 93 / 3e-19 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.001G026800 [exp] 92 / 7e-19 AT5G13480 726 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G263400 [exp] 90 / 2e-18 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.T125206 [exp] 90 / 2e-18 AT5G13480 759 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G197900 [exp] 90 / 3e-18 AT5G13480 760 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.010G255400 [exp] 89 / 5e-18 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 88 / 9e-18 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G087200 [exp] 82 / 3e-16 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.002G051900 [exp] 80 / 6e-16 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF04003 [flax] [poplar] Utp12 Dip2/Utp12 Family
Representative CDS sequence Show only first row Show all	>Lus10033802 pacid=23172879 polypeptide=Lus10033802 locus=Lus10033802.g ID=Lus10033802.BGIv1.0 annot-version=v1.0 ATGGTGAAATCATATCTTAAGTACGAGCCTCGAGCTTCGTTCGGGGTTATAGCATCAGGCGAGTCGAACATAGCCTACGACAGCTCCGGCAAGTACCTGC TAGCTCCGGCGCTCGAGAAGGTCGGAGTTTGGCACGTCAGGCAAGGAATATGCTTTAGGACGCTAGAGCCTTCTTCAGCTTCTCGCGCGGGCCCTTCTCT TGCTGTAACGCACATAGCCTCCTCTGCTACTTCTCTGAGGCCAACAAAAGATAGGGTTGCAACTGTGAGGTTCAATATGTCAGGAACCTTGCTTGCTTGT CAATCAGCAGGCAAGATGGTTGATGTATACAATGTCCTTGATGATGCTGAAGCAAAGCGCAAGGCTAAACGTAGGGTTCACAGGAAGAAGGAAAAGAAGT CTTCAAAAGGAGCAGTTGAGGTCACTGAAAATGATAAAGACCTTGCTGCAGAAGAAGACGGGAAAAGCCCAGTGATTACTGTGATTGACATTTTTAAGCT TCTCCAAACCATTCGAGCTGGAAAAAAAGTGTGCTCCATTTCCTTCAGCCCGACTACTACTAAGAACTCATTGGCTACATTGGCGTTGTCATTGAATAAT AACTTATTGGAGTTCTATTCTATAGATAGCAATACAAACACAAAAAGCCTAGCTCTTGAGCTACAGGGGCACAGGTCTGATGTTAGGAGTCTGACACTTA CTTCAGACAACAGTCTTTTGATGTCCACCAGTCACGATGCAGTAAGGATTTGGAATCCCAGTACCGGTTCTTGTCTTCGAACTATAGAATCTGGATATGG ACTATGTGGATTATTTGTTCCTAAGAACAGATACGCACTTGTCGGGACAAAATCTGGCGCTGTTGAAATCATAGATATTGGCAGTGCCACGAGAGCTGAA GTAGTAGAAGCTCACGGTCGCGCCATCCAGTCAATTGCTGCTATTCCAAATGAAAATGGTTTTGTAACAGGAAGTGCAGATCACGATGTTAAGTTTTGGG AGTATGAAATGAAGCAGAAACCTGGTCAGGATACAAAGCAGCTAACCTTATCTAATGTCAGGTCTTTGAAGATGAATGATGACGTTCTAGTAGTTGCAGT TGACCCTGATGCTAAATATATTGCTGTTGCCTTGTTAGATAACACAGTGAAGGTTTTCTTCATGGATTCTCTCAAGCTCTTTCTTACATTATACGGTCAC AAGCTACCTGTAATGTGCATGGATATTTCTTCAGATGGAGAGTTGATTGTTACTGGCTCAGCTGACAAAAACTTGAAGATTTGGGGTTTGGACTTTGGTG ACTGTCATAAATCTCTATTCGCTCATAACGATAGTGTCATGGCAGTTAAATTTGTTGCCAACACTCACTATATGTTCAGTGTCGGAAAAGATAAACTCGT AAAGTACTGGGATGCCGACAAGTTTGAGGAGCTTTTGTCTCTTGATGGGCACCATGCTGAAATTTGGTGTCTTGCAATCAGCAGCCGTGGTGACTTTCTT GTCACGGGATCTCATGACCGATCCATACGACGTTGGGATCGTACTGACGAGCCCTTTTTCATCGAGGAAGAGAAGGAGAAAAGGTTGGAAGAAATGTTCG AAGCTGATCAGGAAAATCCATTTGAAAACAGATCTGCACCCAAGGAAGAGATCCCGGAAGAAGGAGCAGTTGCCTTGGCTGGGAGGAAAACTCAAGAAAG TCTCACGGCCACCGATGTGATTGTCGAAGCACTAGACGTAGCAGAAGACGAGTTGAGCCGTATTGCTGAACATGAAGAGGAGAGAGCTAGGGGCCAAGCT TCTCGCTTTCAACCGAATATTATGTTGAAAGGGCTTTCACCTTCCAATTACATTCTTGATTCCCTCTCAAAAGTTCATGCAAATGATCTGGAGCAGACAA TGCTGGCTTTACCATTCACAGATGCTCTGAAGATTTTAGCATACCATAAGTACTGGATCTCAATCCCTGATAAGGTCGAGTTAGTCTGCAGAATTGCAAC GGTACTGTTGCAGATCAACTTTAACCAGCTAGTCAGCACTCCTGCTTCTAGACCTATTTTGACTGTGCTCAAGGATGAACTCCATTTAAGAGTCAAGGAA TGCAAAGACATTCTTGGTTTCAATCTAGCAGCAATGGATCATCTGAAGCAAATTATGGCCTTGAGATCAGACGCACTCTTCCAAGATGCAAAGGAAAAGC TCCAGGAGATCCTGTCGCAGCAATCGAAACGCTTGGAAGCAAGATCGGAGACCAAAGGGGAGAAACGGAGGAAGAAGAAACAGAAGAAGTGA
AA sequence Show only first row Show all	>Lus10033802 pacid=23172879 polypeptide=Lus10033802 locus=Lus10033802.g ID=Lus10033802.BGIv1.0 annot-version=v1.0 MVKSYLKYEPRASFGVIASGESNIAYDSSGKYLLAPALEKVGVWHVRQGICFRTLEPSSASRAGPSLAVTHIASSATSLRPTKDRVATVRFNMSGTLLAC QSAGKMVDVYNVLDDAEAKRKAKRRVHRKKEKKSSKGAVEVTENDKDLAAEEDGKSPVITVIDIFKLLQTIRAGKKVCSISFSPTTTKNSLATLALSLNN NLLEFYSIDSNTNTKSLALELQGHRSDVRSLTLTSDNSLLMSTSHDAVRIWNPSTGSCLRTIESGYGLCGLFVPKNRYALVGTKSGAVEIIDIGSATRAE VVEAHGRAIQSIAAIPNENGFVTGSADHDVKFWEYEMKQKPGQDTKQLTLSNVRSLKMNDDVLVVAVDPDAKYIAVALLDNTVKVFFMDSLKLFLTLYGH KLPVMCMDISSDGELIVTGSADKNLKIWGLDFGDCHKSLFAHNDSVMAVKFVANTHYMFSVGKDKLVKYWDADKFEELLSLDGHHAEIWCLAISSRGDFL VTGSHDRSIRRWDRTDEPFFIEEEKEKRLEEMFEADQENPFENRSAPKEEIPEEGAVALAGRKTQESLTATDVIVEALDVAEDELSRIAEHEEERARGQA SRFQPNIMLKGLSPSNYILDSLSKVHANDLEQTMLALPFTDALKILAYHKYWISIPDKVELVCRIATVLLQINFNQLVSTPASRPILTVLKDELHLRVKE CKDILGFNLAAMDHLKQIMALRSDALFQDAKEKLQEILSQQSKRLEARSETKGEKRRKKKQKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21540			transducin family protein / WD...		Lus10033802 [exp]	0	1
AT1G04870		PRMT10, ATPRMT1...	protein arginine methyltransfe...		Lus10043295 [exp]	1.4	0.9537
AT1G15440		ATPWP2	\(PERIODIC TRYPTOPHAN PROTEIN ...		Lus10043473 [exp]	6.9	0.9280
AT1G79950			RAD3-like DNA-binding helicase...		Lus10011460 [exp]	9.5	0.9106
AT2G21440			RNA-binding (RRM/RBD/RNP motif...		Lus10022044 [exp]	10.4	0.9237
AT5G40820		ATATR, ATRAD3, ...	ARABIDOPSIS THALIANA ATAXIA TE...		Lus10025091 [exp]	10.7	0.9248
AT5G05560		EMB2771, APC1	EMBRYO DEFECTIVE 2771, E3 ubiq...		Lus10007498 [exp]	11.1	0.9272
AT2G44040			Dihydrodipicolinate reductase,...		Lus10041701 [exp]	11.3	0.8946
AT2G21790		ATRNR1, RNR1, C...	CRINKLY LEAVES 8, RIBONUCLEOTI...		Lus10020845 [exp]	15.5	0.9142
AT5G48310			unknown protein		Lus10016071 [exp]	16.0	0.9262
AT1G52980		AtNug2	nuclear/nucleolar GTPase 2, GT...		Lus10021017 [exp]	16.6	0.9088

Compare expression of checked genes

Lus10033802 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.