Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04950 569 / 0 EMB2781, ATTAF6, TAF6, TAFII59 TBP-associated factor 6, EMBRYO DEFECTIVE 2781, TATA BOX ASSOCIATED FACTOR II 59 (.1.2.3) AT1G54360 436 / 2e-148 TAF6b4, TAF6b3, TAF6b2, TAF6b1 TBP-associated factor 6B4, TBP-ASSOCIATED FACTOR 6B2, TBP-ASSOCIATED FACTOR 6B1, TBP-ASSOCIATED FACTOR 6B (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014628 [exp] 867 / 0 AT1G04950 677 / 0.0 TBP-associated factor 6, EMBRYO DEFECTIVE 2781, TATA BOX ASSOCIATED FACTOR II 59 (.1.2.3) Lus10016578 [exp] 533 / 0 AT1G04950 617 / 0.0 TBP-associated factor 6, EMBRYO DEFECTIVE 2781, TATA BOX ASSOCIATED FACTOR II 59 (.1.2.3) Lus10002443 [exp] 524 / 0 AT1G04950 603 / 0.0 TBP-associated factor 6, EMBRYO DEFECTIVE 2781, TATA BOX ASSOCIATED FACTOR II 59 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G161100 [exp] 686 / 0 AT1G04950 639 / 0.0 TBP-associated factor 6, EMBRYO DEFECTIVE 2781, TATA BOX ASSOCIATED FACTOR II 59 (.1.2.3) Potri.001G359400 [exp] 548 / 0 AT1G04950 526 / 0.0 TBP-associated factor 6, EMBRYO DEFECTIVE 2781, TATA BOX ASSOCIATED FACTOR II 59 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF02969 [flax] [poplar] TAF TATA box binding protein associated factor (TAF) CL0020 [flax] [poplar] TPR PF07571 [flax] [poplar] TAF6_C TAF6 C-terminal HEAT repeat domain
Representative CDS sequence Show only first row Show all	>Lus10033805 pacid=23172864 polypeptide=Lus10033805 locus=Lus10033805.g ID=Lus10033805.BGIv1.0 annot-version=v1.0 ATGAGCATCGTACCAAAAGAGACAATCGAAGTCATAGCACAGAGCACCGGAATCAGCAATTTGTCTTCCGATGCCGCTCTCGCCCTCGCTCCCGACGTCG AGTATCGCCTACGCGAAATAATCCAAGAATCCATCAAATCCATGCGCCATTCCCGCCGCACTACCCTCACAACCGACGACGTCGACGCCGCTCTCAGCCT CAGAAATCTCGAGCCAGTGTACGGATTTGCATCGGGAGGGCCTTTGCGGTTCAAGCGAGCTATTGGTCACAAGGATTTGTTCTACATTGACGACAAAGAT GTCGACTTTAAGGATGTGATTGAAGCACCATTACCTAAAGCGCCACTTGATGCGTCAGTTGTCTGTCACTGGCTAGCTATAGAAGGGGTGCAGCCTGCTA TCCCTGAAAATGCACCTTTGAGAGTTATTGCTCCTCCTTCTGATGCCAAAATCTCTGAACCAAAAGATCAACTTCCCGTGGATATCAAGTTGCCGGTTAA ACATGTATTATCAAGGGAGTTACAGCTATACTATGAAAAAATCAAAGAACTCACTTTGACAAGGTCTGTTACTCCCCTCTTTCAAGAAGCATTAGTGAGC CTGGCTACTGACTCAGGGCTTCATCCGCTGGTTCCTTATTTCACTTACTTCATAACTGATGAGGTCTCCCGTGGTTTGCATGACTTCTCCCTTCTTTTTG CTCTGATGCGTGTTGTTTGGAGTCTTCTTCAGAATCCCCACATACACATTGAGCCATACCTACACCAATTGATGCCATCTGTTGTGACATGCCTGGTTGC AAGACGGTTGGGGAATAGATTAGCTGACAATCACTGGGAACTAAGGGACTACGCGGCTAACCTAGTTGCCTCGATTTGTAAAAGGTTTGGGCATGTTTAC CACTACCTACAGACGAGGCTAACGAAAACCTTGCTCAATGCACTTCTGGACCCAAAGAAGTCATTGACCCAGCATTATGGAGCAATTCAAGGATTGACGG CATTAGGCCCCAATGTGGTTCGCCTACTTCTACTACCAAACCTCGAGCCATACCTGCAACTTTTAGAACCAGAGATGCTTCTTGAGAAGCAGAAGAACGA GATGAAGAGGCACGAGGCTTGGCGTGTTTATGGGGCATTATTGTGTGCTGCCGGTCAATCTGCATACGAACGATTAAAAATGTTTCCACCTTTGCCGTCA AACGCAGTATGGAGGACCAACCACAAGGTTTTTGCAGGAAAACCTAATAACAAACGCAAAGAAACTGCAGAACTGTCGGGTCAGCCCCCGATGAAGAAGA TAGCAACTGGTGGCCCTATTGATACATCATCATCTCGTTCCTCACCACCCTCTCAAATGCAAATTGTTGCAACTGGTGAACCTCAAAACAATTGTAACCC CGGGCCATCAACCTCTGTCCCAGCATCAAATAATGGCGGCGAATCGAGCCAGAAAGTCAGGAGGACTAGTAAGAGAGATCAGCAAGTTGTAAAGAAGTCT GCCATTTTGGATCTAGTTTGGAAGGATGATCTGAATTCTGGACAACTTCTGGTCTCGTTGTTCGACCATTTCGGTGAAGGCAGCCTATCCTTCATTCCAG CCCCTGAGATGTCGTTATTCTTGTGA
AA sequence Show only first row Show all	>Lus10033805 pacid=23172864 polypeptide=Lus10033805 locus=Lus10033805.g ID=Lus10033805.BGIv1.0 annot-version=v1.0 MSIVPKETIEVIAQSTGISNLSSDAALALAPDVEYRLREIIQESIKSMRHSRRTTLTTDDVDAALSLRNLEPVYGFASGGPLRFKRAIGHKDLFYIDDKD VDFKDVIEAPLPKAPLDASVVCHWLAIEGVQPAIPENAPLRVIAPPSDAKISEPKDQLPVDIKLPVKHVLSRELQLYYEKIKELTLTRSVTPLFQEALVS LATDSGLHPLVPYFTYFITDEVSRGLHDFSLLFALMRVVWSLLQNPHIHIEPYLHQLMPSVVTCLVARRLGNRLADNHWELRDYAANLVASICKRFGHVY HYLQTRLTKTLLNALLDPKKSLTQHYGAIQGLTALGPNVVRLLLLPNLEPYLQLLEPEMLLEKQKNEMKRHEAWRVYGALLCAAGQSAYERLKMFPPLPS NAVWRTNHKVFAGKPNNKRKETAELSGQPPMKKIATGGPIDTSSSRSSPPSQMQIVATGEPQNNCNPGPSTSVPASNNGGESSQKVRRTSKRDQQVVKKS AILDLVWKDDLNSGQLLVSLFDHFGEGSLSFIPAPEMSLFL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04950		EMB2781, ATTAF6...	TBP-associated factor 6, EMBRY...		Lus10033805 [exp]	0	1
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10011481 [exp]	1.7	0.9243
AT2G47680	C3HZnF		zinc finger (CCCH type) helica...		Lus10030371 [exp]	8.0	0.9081
AT5G04620		BIO4, ATBIOF	biotin 4, biotin F (.1.2)		Lus10009024 [exp]	14.0	0.8691
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10023119 [exp]	15.3	0.8770
AT3G30300			O-fucosyltransferase family pr...		Lus10005094 [exp]	17.5	0.8791
AT4G27760		FEY3, FEY	FOREVER YOUNG, NAD(P)-binding ...		Lus10009112 [exp]	18.2	0.8478
AT3G06330			RING/U-box superfamily protein...		Lus10038632 [exp]	19.1	0.8164
AT1G05910			cell division cycle protein 48...		Lus10027038 [exp]	22.6	0.8678
AT4G17000			unknown protein		Lus10035651 [exp]	22.7	0.8965
AT5G20170			RNA polymerase II transcriptio...		Lus10019427 [exp]	23.0	0.8648

Compare expression of checked genes

Lus10033805 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.