Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04520 209 / 8e-71 Nucleic acid-binding, OB-fold-like protein (.1) AT5G35680 207 / 5e-70 Nucleic acid-binding, OB-fold-like protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014627 [exp] 219 / 2e-74 AT2G04520 254 / 1e-88 Nucleic acid-binding, OB-fold-like protein (.1) Lus10000920 [exp] 216 / 3e-73 AT2G04520 252 / 1e-87 Nucleic acid-binding, OB-fold-like protein (.1) Lus10002264 [exp] 211 / 2e-71 AT2G04520 248 / 6e-86 Nucleic acid-binding, OB-fold-like protein (.1) Lus10020713 [exp] 140 / 1e-43 AT2G04520 169 / 4e-55 Nucleic acid-binding, OB-fold-like protein (.1) Lus10029827 [exp] 139 / 6e-43 AT2G04520 168 / 9e-55 Nucleic acid-binding, OB-fold-like protein (.1) Lus10042438 [exp] 94 / 2e-25 AT2G04520 100 / 5e-28 Nucleic acid-binding, OB-fold-like protein (.1) Lus10034249 [exp] 42 / 5e-05 AT2G40780 197 / 4e-65 Nucleic acid-binding, OB-fold-like protein (.1.2) Lus10029014 [exp] 40 / 0.0002 AT2G40780 199 / 4e-66 Nucleic acid-binding, OB-fold-like protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G219200 [exp] 216 / 2e-73 AT2G04520 198 / 2e-66 Nucleic acid-binding, OB-fold-like protein (.1) Potri.014G160900 [exp] 213 / 2e-72 AT2G04520 200 / 3e-67 Nucleic acid-binding, OB-fold-like protein (.1) Potri.002G031700 [exp] 167 / 3e-54 AT2G04520 176 / 1e-57 Nucleic acid-binding, OB-fold-like protein (.1) Potri.014G093801 [exp] 77 / 1e-19 AT2G04520 76 / 2e-19 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF01176 [flax] [poplar] eIF-1a Translation initiation factor 1A / IF-1
Representative CDS sequence Show only first row Show all	>Lus10033806 pacid=23172778 polypeptide=Lus10033806 locus=Lus10033806.g ID=Lus10033806.BGIv1.0 annot-version=v1.0 ATGCCGAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAATGAGGCAGATGACGAGAAGCGTGAGCTGATCTTTAAGGAAGATGGGCAGG AGTATGCTCAGGTGATGCGCATGCTTGGTAATGGCCGCTGTGAAGCTACATGCATTGATGGCATCAAACGCCTATGCCATATTCGTGGCAAGATGCACAA GAAGGTCTGGATCGCAGCTGGTGATATAATCCTTGTTGGGCTCAGGGACTATCAAGATGACAAGGCTGATGTTATCCTCAAGTACATGCCCGATGAAGCC AGGCTTCTCAAGGCATACGGTGAACTTCCGGAGAATACTCGTCTCAATGAGGGTATTGCCGGAGGTATTGATGAGGAAGATGAGGGTGCCATTGACGACT ATGTTGAGTTTGAAGATGAAGACATTGATAAAATCTAA
AA sequence Show only first row Show all	>Lus10033806 pacid=23172778 polypeptide=Lus10033806 locus=Lus10033806.g ID=Lus10033806.BGIv1.0 annot-version=v1.0 MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVMRMLGNGRCEATCIDGIKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEA RLLKAYGELPENTRLNEGIAGGIDEEDEGAIDDYVEFEDEDIDKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04520			Nucleic acid-binding, OB-fold-...		Lus10033806 [exp]	0	1
AT5G04000			unknown protein		Lus10042034 [exp]	1.0	0.8942
AT5G42300		UBL5	ubiquitin-like protein 5 (.1)		Lus10023188 [exp]	3.2	0.8626
AT1G65032			unknown protein		Lus10007103 [exp]	4.8	0.7629
AT4G08230			glycine-rich protein (.1.2)		Lus10024100 [exp]	4.9	0.8593
AT2G37975			Yos1-like protein (.1)		Lus10000226 [exp]	6.5	0.8172
AT1G27350			Ribosome associated membrane p...		Lus10037031 [exp]	6.9	0.7967
AT1G25275			unknown protein		Lus10006792 [exp]	7.5	0.8366
AT4G08460			Protein of unknown function (D...		Lus10024758 [exp]	7.9	0.8081
AT4G14880		OLD3, CYTACS1, ...	ONSET OF LEAF DEATH 3, O-acety...		Lus10019003 [exp]	12.0	0.7850
AT1G27000			Protein of unknown function (D...		Lus10037210 [exp]	15.0	0.8118

Compare expression of checked genes

Lus10033806 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.