Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04960 218 / 2e-70 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) AT1G27000 134 / 5e-38 Protein of unknown function (DUF1664) (.1) AT2G02730 120 / 9e-33 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) AT1G24265 70 / 8e-14 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2), Protein of unknown function (DUF1664) (.3) AT1G24267 56 / 5e-09 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014626 [exp] 332 / 5e-115 AT1G04960 318 / 3e-108 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) Lus10036718 [exp] 146 / 1e-42 AT1G27000 272 / 1e-90 Protein of unknown function (DUF1664) (.1) Lus10037210 [exp] 144 / 8e-41 AT1G27000 252 / 8e-82 Protein of unknown function (DUF1664) (.1) Lus10013269 [exp] 136 / 1e-38 AT1G27000 254 / 8e-84 Protein of unknown function (DUF1664) (.1) Lus10030793 [exp] 123 / 8e-32 AT1G69830 1173 / 0.0 alpha-amylase-like 3 (.1) Lus10003127 [exp] 75 / 1e-15 AT1G24265 202 / 6e-63 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2), Protein of unknown function (DUF1664) (.3) Lus10011347 [exp] 73 / 9e-15 AT1G24265 226 / 2e-71 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2), Protein of unknown function (DUF1664) (.3) Lus10027272 [exp] 52 / 8e-08 AT2G27410 66 / 9e-13 Domain of unknown function (DUF313) (.1) Lus10027284 [exp] 50 / 3e-07 AT2G27410 67 / 2e-12 Domain of unknown function (DUF313) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G219300 [exp] 243 / 5e-80 AT1G04960 325 / 7e-111 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) Potri.014G160800 [exp] 238 / 2e-78 AT1G04960 309 / 6e-105 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) Potri.008G149000 [exp] 131 / 9e-37 AT1G27000 327 / 3e-112 Protein of unknown function (DUF1664) (.1) Potri.010G092700 [exp] 127 / 2e-35 AT1G27000 331 / 1e-113 Protein of unknown function (DUF1664) (.1) Potri.003G169200 [exp] 77 / 3e-16 AT1G24267 214 / 5e-67 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) Potri.001G058700 [exp] 77 / 4e-16 AT1G24267 211 / 1e-65 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07889 [flax] [poplar] DUF1664 Protein of unknown function (DUF1664)
Representative CDS sequence Show only first row Show all	>Lus10033807 pacid=23172863 polypeptide=Lus10033807 locus=Lus10033807.g ID=Lus10033807.BGIv1.0 annot-version=v1.0 ATGTGGTGGAGCTGTGGAGTTTCAGGTCCCCTAATTCAGGAGAGCTCTGTTTTACATTGGTTACTTTGGGAGGAAGACAAGCAGCTGCTGGTGAGAAGGA ACAACAAGGATATGATCAAATATGGAGCACGCCCTAATCTTCAGAATGGGGCCATTGGTCATCTCCTTGGAGCAGCGGGTGCTGCTGAAGCAATCTTCAG TATTCGCCAATTGGCTCAAGAAATTAAGGAGATATCCATGTCCAATCCTGTAACCATCTTCAATGGCAATTCTGAAAGCGGAAGCTTAGCATCTTATATC ATGCCAGCTGCAGCAGTGGGAGCAATGGGTTATTGTTACATGTGGTGGAAGGCAAAGCAGGGTTGGTCATTATCAGATGTAATGTTTGTGACTAAGAACA ATATGAAAAATGCAGTCGAATCTGTCTCAAAACAATTGGAGCATCTATCTGATTCACTTGCTAATACAAAGAAGCATCTGAGTAATAGGCTCGAAAACTT GGACTGGAAAGTGGACGAGCAAATAGAGACATCTAAGCAAATTGCTAGTAATGTGGATGATTTGAATTCAAACATTTCCCAAATTGGATTTGATGTTGGA ACAATTCATCATATGATAGCTGGCCTGGATGTAACAAACTCAGGTCTTTGGTACCTATGCCAGGTCGCTGATGGAATGAAAGATGGGTTTGGAAAAATAG TTCCCAAGGTCAGATAG
AA sequence Show only first row Show all	>Lus10033807 pacid=23172863 polypeptide=Lus10033807 locus=Lus10033807.g ID=Lus10033807.BGIv1.0 annot-version=v1.0 MWWSCGVSGPLIQESSVLHWLLWEEDKQLLVRRNNKDMIKYGARPNLQNGAIGHLLGAAGAAEAIFSIRQLAQEIKEISMSNPVTIFNGNSESGSLASYI MPAAAVGAMGYCYMWWKAKQGWSLSDVMFVTKNNMKNAVESVSKQLEHLSDSLANTKKHLSNRLENLDWKVDEQIETSKQIASNVDDLNSNISQIGFDVG TIHHMIAGLDVTNSGLWYLCQVADGMKDGFGKIVPKVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04960			Protein of unknown function (D...		Lus10033807 [exp]	0	1
AT5G04850		VPS60.2	SNF7 family protein (.1.2)		Lus10028867 [exp]	1.4	0.9002
AT5G01800			saposin B domain-containing pr...		Lus10014162 [exp]	3.2	0.8690
AT3G26980		MUB4	membrane-anchored ubiquitin-fo...		Lus10041539 [exp]	3.5	0.8532
AT5G61530			small G protein family protein...		Lus10042986 [exp]	11.3	0.8422
AT5G02800		CDL1	CDG1-like 1, Protein kinase su...		Lus10019897 [exp]	13.4	0.8418
AT5G01750			Protein of unknown function (D...		Lus10009094 [exp]	15.0	0.7951
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Lus10028347 [exp]	15.2	0.8135
AT1G50670			OTU-like cysteine protease fam...		Lus10040075 [exp]	15.2	0.8317
AT5G10530			Concanavalin A-like lectin pro...		Lus10014649 [exp]	17.9	0.8143
AT2G31130			unknown protein		Lus10000990 [exp]	18.3	0.8307

Compare expression of checked genes

Lus10033807 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.