Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04970 575 / 0 lipid-binding serum glycoprotein family protein (.1.2) AT3G20270 348 / 6e-115 lipid-binding serum glycoprotein family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014625 [exp] 951 / 0 AT1G04970 595 / 0.0 lipid-binding serum glycoprotein family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G160700 [exp] 634 / 0 AT1G04970 615 / 0.0 lipid-binding serum glycoprotein family protein (.1.2) Potri.001G358800 [exp] 470 / 6e-163 AT1G04970 494 / 1e-172 lipid-binding serum glycoprotein family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0648 [flax] [poplar] Aha1_BPI PF02886 [flax] [poplar] LBP_BPI_CETP_C LBP / BPI / CETP family, C-terminal domain CL0648 [flax] [poplar] Aha1_BPI PF01273 [flax] [poplar] LBP_BPI_CETP LBP / BPI / CETP family, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10033808 pacid=23172773 polypeptide=Lus10033808 locus=Lus10033808.g ID=Lus10033808.BGIv1.0 annot-version=v1.0 ATGGCGTCGCCTACTCCTCTGTTCTTCATCTTCTTCCTGGTCTTAGCTTCCTACCCAAATTCGCAGAAAGCCCAATCGATCGAAGGAAGCAGCAGCACTG GCCAAGGTTTCATGGCTATGGAGATATCGGAGAGGGGCCTTGATTTTCTCAAGGACTTGCTCATAAACAAGGCGATTGCTTCGACCATACCTCTGAAATT GCCTAGGCTTGAGAAATCTACCAAGCTTCCCTTCGTGGGAACTGTTCGGATGGTGCTGACGGACATAATCATCTATGAAGTAGATGTCTTGTCTTCTTAT GTTAAGCCAGGAGATACTGGCGTTGCAGTTGTTGCTTCCGGGATGACTTGTAATTTGAGCATGAATTGGTATTACAAGTATGATACTTGGCTTCTACCTG TCGAGATTTCTGATAAAGGGAACGCTTCTGTTCAGGTTGAAGGAATGGAAGTAGGGCTTACATTGGGGTTAAAGAATCAGAATGGAAGTCTGAAGCTGTC AGTTATAGAGTGTGGCTGCATGGTTAAGGACATTAAGATAAATGTAAAGGGAGGAGCATCATGGTTCTATCAAGGAATCTTTGATGCATTTGCAGACCAC ATTGAATCTGCAGTTGAGAGCACCATTACCACGAAGCTTGGAGATGGGATAGTGAAGCTTGATGCATTTCTCCAGTCTCTTCCTAAAGAAATTCCAGTAG ATGACATTGCTGCTTTAAATGTGACTTTCTTGGAAGACCCTTCATTGACCAGTAACTCTATTCAGTTTGACATAAATGGTTTATTCATGGCGAGAAAAAA TCCATCAACATCCATGAATCATTACTTGAATTCACAATCGTCGGTTCTCTGCTCGGATCCGTCTAGAATGCTTGGAATTAAACTGGATGAAGCTGTTTTC AATTCTGCGTGCACGTTATACTATGATGCAAAATTCATGCAGTGGATTGTAGATAAAGTCCCAGATCAATCTCTTCTCAACACTGCCAGATGGAGATTCA TCGTCCCGAAACTTTACAAGAAGTATCCAAACCACGACCTGAACTTAAACATCTCTCTGTCCTCCCCGCCAGTTATCAGTGTGTCGGACCAGAAAATTGA CGCAACAGTAAATGCAGTCTTGATCATTAACGTTCTGGATGTAGATCAAGTGATACCAGTTGCTTGCATTTCTTTTGCAGTGAGCTGCTCGGCTTCTGTA AGACTGTCGGGGAATAACCTTGCTGGGAGTATGAAACTGGATGGCTTCTCAATGTCACAGAAGTGGAGTGAGATTGGGAATGTTCCATTGTTTGTCATTC AGCCTTTGATGTGGACAGCAATAGAAACAGTGTTCTTGCCATATGTGAATGCCCACCTCGCGCAGGGTATACCGTTGCCAATCATACATGGTTTCACTCT GCAGAATGCACAAACCATCACTGCAAGCTCAAAGATCACTATCTGTGGAGATGTGGAGTACAAGGATGAGCTTGACCAGATTGTATTACTGAACTGA
AA sequence Show only first row Show all	>Lus10033808 pacid=23172773 polypeptide=Lus10033808 locus=Lus10033808.g ID=Lus10033808.BGIv1.0 annot-version=v1.0 MASPTPLFFIFFLVLASYPNSQKAQSIEGSSSTGQGFMAMEISERGLDFLKDLLINKAIASTIPLKLPRLEKSTKLPFVGTVRMVLTDIIIYEVDVLSSY VKPGDTGVAVVASGMTCNLSMNWYYKYDTWLLPVEISDKGNASVQVEGMEVGLTLGLKNQNGSLKLSVIECGCMVKDIKINVKGGASWFYQGIFDAFADH IESAVESTITTKLGDGIVKLDAFLQSLPKEIPVDDIAALNVTFLEDPSLTSNSIQFDINGLFMARKNPSTSMNHYLNSQSSVLCSDPSRMLGIKLDEAVF NSACTLYYDAKFMQWIVDKVPDQSLLNTARWRFIVPKLYKKYPNHDLNLNISLSSPPVISVSDQKIDATVNAVLIINVLDVDQVIPVACISFAVSCSASV RLSGNNLAGSMKLDGFSMSQKWSEIGNVPLFVIQPLMWTAIETVFLPYVNAHLAQGIPLPIIHGFTLQNAQTITASSKITICGDVEYKDELDQIVLLN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04970			lipid-binding serum glycoprote...		Lus10033808 [exp]	0	1
AT4G16520		ATG8F	autophagy 8f, Ubiquitin-like s...		Lus10000733 [exp]	1.0	0.9746
AT1G21000			PLATZ transcription factor fam...		Lus10002700 [exp]	3.5	0.9713
AT3G14160			2-oxoglutarate-dependent dioxy...		Lus10025260 [exp]	4.2	0.9554
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10035873 [exp]	4.7	0.9721
AT1G68300			Adenine nucleotide alpha hydro...		Lus10041436 [exp]	4.9	0.9583
AT1G44770			unknown protein		Lus10034500 [exp]	5.0	0.9671
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10022727 [exp]	6.0	0.9677
AT5G49710			unknown protein		Lus10000765 [exp]	6.9	0.9631
AT3G43230			RING/FYVE/PHD-type zinc finger...		Lus10039922 [exp]	7.5	0.9393
AT5G18640			alpha/beta-Hydrolases superfam...		Lus10033968 [exp]	9.3	0.9418

Compare expression of checked genes

Lus10033808 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.