Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04530 540 / 0 CPZ, TRZ2 TRNASE Z 2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) AT1G74700 357 / 1e-123 NUZ, TRZ1 tRNAse Z1 (.1) AT2G01730 45 / 7e-05 ATCPSF73-II, EDA26 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014623 [exp] 715 / 0 AT2G04530 543 / 0.0 TRNASE Z 2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10023618 [exp] 327 / 1e-111 AT1G74700 437 / 3e-156 tRNAse Z1 (.1) Lus10024249 [exp] 325 / 1e-110 AT1G74700 433 / 1e-154 tRNAse Z1 (.1) Lus10037338 [exp] 48 / 1e-05 AT2G01730 732 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1) Lus10035763 [exp] 47 / 1e-05 AT2G01730 755 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G160600 [exp] 543 / 0 AT2G04530 528 / 0.0 TRNASE Z 2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Potri.015G064400 [exp] 343 / 6e-118 AT1G74700 462 / 4e-166 tRNAse Z1 (.1) Potri.010G106200 [exp] 46 / 3e-05 AT2G01730 898 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0381 [flax] [poplar] Metallo-HOrase PF00753 [flax] [poplar] Lactamase_B Metallo-beta-lactamase superfamily
Representative CDS sequence Show only first row Show all	>Lus10033809 pacid=23172849 polypeptide=Lus10033809 locus=Lus10033809.g ID=Lus10033809.BGIv1.0 annot-version=v1.0 ATGCAAACTTTTCTTCCCATTTCTCCCTCAAATCCCCCTTCAATTTTCCATTTCCACCATCATCCAGTTCCCCTACCTACAGCAACATCTATTTACTTCC GGAACGTCGCAAATTCCACCACCGCCAGGGCTTCCGGGGGCTACCTGTCGTCTCTCAGCCGCGTAATCGACGAGGAAGAAGAGTACAGGAAGGCTCGCGC CGCTGTTTTTCGTAAAGGCGTTGACTTGGAAGGCTACACCATCGAGGGACTCTCCGTAGGAGGCCACGAGACTTGCGTTATAATCCCTGAATTGAAGTGT GCTTTCGACATTGGGAGATGCCCTTCTAGAGCTATTCAACAGAACTTCCTCTTCATCACCCATGGCCATCTTGATCACATCGGAGGGTTGCCAACGTATG TGGCTAGCCGGGGTCTATACAATTTGAAACCTCCCACCATATTTGTGCCTCCCTCACTCAAAGAGGATGTTGAGAAGTTGCTTGACATTCACAGGAGCAT GGGCCAAGTTGAACTGAATGCCGAGTTGGTTGCCTTGGACATAGGTGAAACATATGAACTTCGCAATGACATTGTGGTCAGGCCATTTAGGACGCATCAT GTCATTCCCAGTCAGGGGTATGTTGTGTACTCCCTTAGGAAGAAGTTGAAGAAGCAATATAGTCAAATGAAAGGAAAACAGATTGAGAAATTGAAGAAAT CTGGAGTAGAGATCACAGACATCATAATGTCTCCGGAGATTGCGTTTACTGGGGACACAACTTCAGATTACATGCTTGATCCTCGTAATTCAGATGCATT GAGAGCCAAAGTTCTTATAACTGAGGCAACTTTCTTGGATGATGGGTTTAGTGTTGAACATGCACGGCAACATGGCCATACCCATTTGTCTGAGATCATT AAGAATGCAGAATGGATTCGTAGCAAAACAGTCCTGCTAACTCACTTTTCCTCTCGCTATAGCATAGAGGACATCCGAGCAGCTGTTATGAAATTGCAAT CCAAAGTTTCGGCAAAAGTTATTCCTATGACAGAAGGTTTCAAGTCGATTCATACATAG
AA sequence Show only first row Show all	>Lus10033809 pacid=23172849 polypeptide=Lus10033809 locus=Lus10033809.g ID=Lus10033809.BGIv1.0 annot-version=v1.0 MQTFLPISPSNPPSIFHFHHHPVPLPTATSIYFRNVANSTTARASGGYLSSLSRVIDEEEEYRKARAAVFRKGVDLEGYTIEGLSVGGHETCVIIPELKC AFDIGRCPSRAIQQNFLFITHGHLDHIGGLPTYVASRGLYNLKPPTIFVPPSLKEDVEKLLDIHRSMGQVELNAELVALDIGETYELRNDIVVRPFRTHH VIPSQGYVVYSLRKKLKKQYSQMKGKQIEKLKKSGVEITDIIMSPEIAFTGDTTSDYMLDPRNSDALRAKVLITEATFLDDGFSVEHARQHGHTHLSEII KNAEWIRSKTVLLTHFSSRYSIEDIRAAVMKLQSKVSAKVIPMTEGFKSIHT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04530		CPZ, TRZ2	TRNASE Z 2, Metallo-hydrolase/...		Lus10033809 [exp]	0	1
AT1G11750		NCLPP6, NCLPP1,...	NUCLEAR-ENCODED CLPP 1, CLP pr...		Lus10011282 [exp]	1.7	0.8959
AT5G52440		HCF106	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10039254 [exp]	2.8	0.8989
AT1G48570			zinc finger (Ran-binding) fami...		Lus10009049 [exp]	3.9	0.8925
AT5G50110			S-adenosyl-L-methionine-depend...		Lus10043465 [exp]	4.2	0.8857
AT2G01440			DEAD/DEAH box RNA helicase fam...		Lus10034589 [exp]	4.5	0.8783
AT4G38020			tRNA/rRNA methyltransferase (S...		Lus10035953 [exp]	6.8	0.8969
AT4G33480			unknown protein		Lus10020876 [exp]	7.5	0.8655
AT1G30680			toprim domain-containing prote...		Lus10038434 [exp]	9.5	0.8816
AT3G49740			Tetratricopeptide repeat (TPR)...		Lus10011563 [exp]	11.1	0.8366
AT1G26090			P-loop containing nucleoside t...		Lus10034381 [exp]	12.2	0.8391

Compare expression of checked genes

Lus10033809 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.