Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04540 638 / 0 Beta-ketoacyl synthase (.1) AT5G46290 211 / 4e-62 KAS1, KAS I, KASI KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) AT1G74960 206 / 1e-59 ATKAS2, KAS2, FAB1 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014622 [exp] 818 / 0 AT2G04540 701 / 0.0 Beta-ketoacyl synthase (.1) Lus10040883 [exp] 213 / 1e-62 AT5G46290 809 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10025390 [exp] 213 / 1e-62 AT5G46290 803 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10034886 [exp] 211 / 2e-61 AT1G74960 821 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) Lus10004935 [exp] 206 / 2e-61 AT5G46290 606 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10001814 [exp] 207 / 1e-59 AT5G46290 714 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10003195 [exp] 204 / 3e-59 AT5G46290 717 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10033422 [exp] 187 / 2e-53 AT1G74960 716 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) Lus10015267 [exp] 187 / 1e-50 AT5G46280 1098 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G219500 [exp] 664 / 0 AT2G04540 640 / 0.0 Beta-ketoacyl synthase (.1) Potri.006G138000 [exp] 221 / 5e-65 AT1G74960 714 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) Potri.001G088700 [exp] 215 / 2e-63 AT5G46290 659 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.011G079700 [exp] 213 / 4e-63 AT5G46290 779 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.004G131500 [exp] 211 / 5e-62 AT5G46290 795 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.003G142000 [exp] 208 / 5e-61 AT5G46290 668 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.018G062900 [exp] 201 / 8e-58 AT1G74960 715 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF00109 [flax] [poplar] ketoacyl-synt Beta-ketoacyl synthase, N-terminal domain CL0046 [flax] [poplar] Thiolase PF02801 [flax] [poplar] Ketoacyl-synt_C Beta-ketoacyl synthase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10033810 pacid=23172896 polypeptide=Lus10033810 locus=Lus10033810.g ID=Lus10033810.BGIv1.0 annot-version=v1.0 ATGGAATTAATGCAAAAGGGTAGAATAAAAGCTTACCCCAATTCTTTTGCTTTCCCTCCCGAGGCCCTTCTCCGGCGGCCGAGTTTACTCATACTGCCGC CATTCTGGTTCAGAAGTAGAGAAAAGGCTGCAACTTCCCGTACTCAGAATCTTCTAGACATGGCAATCAGTTCTTCATACCGTAAAATTCTAATCCCATC TCGGTCCCGACTCTCCCGTCACTTCGCCACTTCTTCATCCGCCTTTCAGAATCTTGAACCGCCTCCTCCCATCATTCCTCGCCGAGTTGTAGTCACTGGT TTGGGAATGGTAACACCATTGGGGTGCGGAGTGGAGACAACATGGAAACGATTGATAGATGGAAATTGCGGGATAAGGCAAATTAGCCCTGGGGATCTGA AAATGGGTTCCTTTGATGAAGAGACAAAGATGCGGACTTTCGATCAGCTGACCTCCAAAGTTGCCGCAGTTGTGCCTTGTGGGAATGCTCCTGGCGAGTT CTGCGAGGCGCTATGGCTTAATTCCAAGGAGCCATCCATTGCAAGGTTTATAGCGTATGCATTATGTGCCGCGGATGAGGCTTTGAAAGATGCACAATGG GAACCGACGCAAGAGGAGCAGAAGGAAAGAACGGGCGTCTCAATTGGTGGAGGAATCGGCAGCATCACAGATATACTAGATGCATCACAAATGATCTGTG AGAAAAGAGTTCGTCGACTTAGTCCTTTTTTCATACCTCGGATACTGATAAACATGGCTTCTGGTCATGTGAGCATCAAGTATGGATTCCAGGGACCGAA CCATGCGGCCGTGACTGCCTGTGCTACTGGAGCACATTCCATTGGTGACGCAGCAAGAATGGTTCAATTTGGAGACTGTGATGTTATGGTGGCTGGCGGC ACAGAATCCAGCATAGATGCATTATCAATAGCTGGGTTTTGCAAGTCTAGAGCTCTGACATCGAAGTACAATTCAACTCCTCTTGAAGCTTCACGTCCTT TCGATTCTGAGCGGGATGGATTTGTGATAGGGGAAGGCTCTGGCGTAGTGGTGTTAGAAGAACTCGAGCATGCAAAACAAAGGGGAGCAAAGATATATGC CGAGCTTCGTGGATATGGGATGTCAGGAGATGCTCATCACATCACTCAGCCCCCCACGAGTGGAAAAGGAGCCATTCTGGCTATGACTCGTGCCTTACAG CAGTCAGGTTTGCAGCCCAACCAAGTCGATTATGTCAATGCTCATGCTACTTCTACACCTTTAGGTGATGCGGTAGAAGCCACCGCCATCAAAACTCTAT TTGGAGAACATGTGGCCTCGGGAGCTCTGGCATTTTCTTCCACAAAGGGAGCCATCGGTCATCTCCTTGGAGCAGCTGGTGCTGTTGAAGCAATCTTCAC AGTGTTAGCCATACACAAGGGAATTGCACCTTTGACTCTTAACCTAACTAAACCAGATCCAGTGTTCAAAGGCAACTACATGCCCCTGACTTCTACACGA GAGATTCCGATCAGAGTGGCTATATCGAATTCATTTGGCTTCGGAGGGACAAATGCATCTCTGTTATTCTCCTTGGCATCATGA
AA sequence Show only first row Show all	>Lus10033810 pacid=23172896 polypeptide=Lus10033810 locus=Lus10033810.g ID=Lus10033810.BGIv1.0 annot-version=v1.0 MELMQKGRIKAYPNSFAFPPEALLRRPSLLILPPFWFRSREKAATSRTQNLLDMAISSSYRKILIPSRSRLSRHFATSSSAFQNLEPPPPIIPRRVVVTG LGMVTPLGCGVETTWKRLIDGNCGIRQISPGDLKMGSFDEETKMRTFDQLTSKVAAVVPCGNAPGEFCEALWLNSKEPSIARFIAYALCAADEALKDAQW EPTQEEQKERTGVSIGGGIGSITDILDASQMICEKRVRRLSPFFIPRILINMASGHVSIKYGFQGPNHAAVTACATGAHSIGDAARMVQFGDCDVMVAGG TESSIDALSIAGFCKSRALTSKYNSTPLEASRPFDSERDGFVIGEGSGVVVLEELEHAKQRGAKIYAELRGYGMSGDAHHITQPPTSGKGAILAMTRALQ QSGLQPNQVDYVNAHATSTPLGDAVEATAIKTLFGEHVASGALAFSSTKGAIGHLLGAAGAVEAIFTVLAIHKGIAPLTLNLTKPDPVFKGNYMPLTSTR EIPIRVAISNSFGFGGTNASLLFSLAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04540			Beta-ketoacyl synthase (.1)		Lus10033810 [exp]	0	1
AT1G34110			Leucine-rich receptor-like pro...		Lus10017782 [exp]	7.1	0.8633
AT4G18820			AAA-type ATPase family protein...		Lus10005422 [exp]	12.0	0.8704
AT4G28250		ATHEXPBETA1.6, ...	expansin B3 (.1.2)		Lus10018583 [exp]	14.0	0.8277
AT1G53050			Protein kinase superfamily pro...		Lus10035892 [exp]	14.2	0.8633
AT5G04560		DME1, DME	DEMETER, HhH-GPD base excision...		Lus10027713 [exp]	19.4	0.8501
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10023319 [exp]	20.5	0.8321
AT3G26782			Tetratricopeptide repeat (TPR)...		Lus10031989 [exp]	24.3	0.8435
AT1G49970		SVR2, NCLPP5, C...	SUPPRESSOR OF VARIEGATION 2, N...		Lus10020990 [exp]	24.4	0.8547
AT5G19420			Regulator of chromosome conden...		Lus10039525 [exp]	25.1	0.8602
AT3G27180			S-adenosyl-L-methionine-depend...		Lus10041566 [exp]	27.4	0.8523

Compare expression of checked genes

Lus10033810 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.