Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08930 487 / 9e-170 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) AT1G08920 463 / 8e-161 ESL1 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) AT1G54730 462 / 1e-160 Major facilitator superfamily protein (.1.2.3) AT5G27360 462 / 5e-160 SFP2 Major facilitator superfamily protein (.1) AT5G27350 454 / 4e-157 SFP1 Major facilitator superfamily protein (.1) AT3G05165 450 / 1e-155 Major facilitator superfamily protein (.1.2.3.4.5) AT3G05160 444 / 1e-153 Major facilitator superfamily protein (.1.2) AT1G08900 442 / 1e-152 Major facilitator superfamily protein (.1.2.3) AT1G08890 439 / 4e-151 Major facilitator superfamily protein (.1) AT5G18840 432 / 2e-148 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035354 [exp] 474 / 6e-165 AT1G54730 615 / 0.0 Major facilitator superfamily protein (.1.2.3) Lus10029960 [exp] 461 / 4e-159 AT1G54730 490 / 3e-170 Major facilitator superfamily protein (.1.2.3) Lus10033814 [exp] 444 / 4e-153 AT1G08920 466 / 8e-162 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Lus10029962 [exp] 444 / 1e-152 AT1G54730 451 / 2e-155 Major facilitator superfamily protein (.1.2.3) Lus10012780 [exp] 422 / 2e-144 AT5G18840 685 / 0.0 Major facilitator superfamily protein (.1) Lus10035356 [exp] 419 / 6e-143 AT1G54730 430 / 2e-147 Major facilitator superfamily protein (.1.2.3) Lus10029629 [exp] 409 / 1e-139 AT2G48020 661 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008183 [exp] 408 / 7e-139 AT2G48020 657 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008179 [exp] 402 / 4e-137 AT2G48020 590 / 0.0 Major facilitator superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G039900 [exp] 566 / 0 AT1G08920 461 / 1e-159 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.005G037000 [exp] 535 / 0 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027700 [exp] 523 / 0 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.013G027800 [exp] 510 / 4e-179 AT5G27360 405 / 6e-138 Major facilitator superfamily protein (.1) Potri.013G027500 [exp] 484 / 1e-168 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.005G040000 [exp] 433 / 9e-149 AT1G54730 429 / 2e-147 Major facilitator superfamily protein (.1.2.3) Potri.010G026500 [exp] 428 / 1e-146 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1) Potri.014G136600 [exp] 426 / 6e-146 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.002G212900 [exp] 425 / 2e-145 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.007G024300 [exp] 365 / 3e-122 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10033812 pacid=23172895 polypeptide=Lus10033812 locus=Lus10033812.g ID=Lus10033812.BGIv1.0 annot-version=v1.0 ATGGAAAGAGATATGGGGCTACAAGATGGCGAGGTGCTTACAAGGACTCCCTTACTCGTCGTCGCCGACGAAGATCCTCATCGGAAAGCAACCGGCGAGA TATCATCGGTCACGTCAGTCCTGGTCCTTAGCACCATTATTGCTGCATGCGGTTCTTTCTGCTACGGCTATGCTATCGGTTATTCATCTCCGGCCCAAAC TGGAATCATGGCGGACTTGGACCTCTCTCTTCCACAATATTCAATATTTGGATCGATAATGACAATTGGAGGAATGGTGGGTGCAAGCTTCAGTGGCAAG ATAACTGATGTTTTGGGTCGGAGGCGAGCAATGATGATATCAGTGATTGCTTGCGTTCCGGGATGGCTGGCAATATCCTTCGCCAAGGATGCCCTGTGGC TGGAGATTGGGAGATTGTTGATTGGATTTGGAGTTGGCCTCACTAGTTATGTGGTTCCAGTGTACATAGCAGAGATCACTCCAAAAGATATCAGAGGACG GTTCACGTCAATTAATATGTTGATGACAGGTTATGGGTTTTCCGTGGCCTTTTTCATCGGAAGCATCATCTCCTGGCGCACATTATCCCTAATTGCGATG ATTCCATGTATTGTGCAGTTTATTGGCTTGTTCTTCATTCCGGAGTCCCCAAGATGGCTGGCGAAACTGGGTATGGAAAAAGAATTTCAAACTGCACTCC AACGGTTAAGAGGAGAAGATGCTGACATCTCCCAAGAAGCTGATGATATTAGAGGCATAAGCGACATAGTTAAACACAGCAAAGAAGCTGGCCTAGTCAA ACTTTTCCAGAGGAAAAATGCTTACCCACTTGCTATTGTGGTGGGGCTGATGATATTGCAACAACTTGGAGGGAACAGTGGCCTTGCCTTCTACATTGGA ACCGTATTTACCAAAGCCGGTTTTCCAACAACCATAGGTAGCACAGCCTTGTCGATCGTACAAATTCCGTTAAATTTAATAGCTGTGCTTTTAATGGACA CTTTTGGGAGACGGACACTCCTTATGGTGTCTTCAGCTGGAGCATGTTTCAGTCTGCTACTCGTTAGTATTTCTTTCCATTTCCAGGGATTGCATTATTT GGATGAGCTCACTCCCCTACTTGTATTTGTTGGCTTATTGGGTTATATGACAACTTTTGCACTCGGAATGGCTGGAATTCCATGGATTCTGATGTCTGAG ATACTTCCAATAGACGTGAAGGCGTCGGGAGGGAGCATAGTGACTTTAACAAATTGGTCAATGTCATGGCTCATAACATACACTTTCAACTTCATGCTAC AATGGAGCAGTTGTGCCACGTTTTTCACTTTCGGGGCCATCAATGCTGCAGCTATTCTCTTCACTTGGAAGCTGGTTCCTGAAACCAGGGGCCGCACTTT GGAAGAAATTCAAGCACTCTTTACTTAG
AA sequence Show only first row Show all	>Lus10033812 pacid=23172895 polypeptide=Lus10033812 locus=Lus10033812.g ID=Lus10033812.BGIv1.0 annot-version=v1.0 MERDMGLQDGEVLTRTPLLVVADEDPHRKATGEISSVTSVLVLSTIIAACGSFCYGYAIGYSSPAQTGIMADLDLSLPQYSIFGSIMTIGGMVGASFSGK ITDVLGRRRAMMISVIACVPGWLAISFAKDALWLEIGRLLIGFGVGLTSYVVPVYIAEITPKDIRGRFTSINMLMTGYGFSVAFFIGSIISWRTLSLIAM IPCIVQFIGLFFIPESPRWLAKLGMEKEFQTALQRLRGEDADISQEADDIRGISDIVKHSKEAGLVKLFQRKNAYPLAIVVGLMILQQLGGNSGLAFYIG TVFTKAGFPTTIGSTALSIVQIPLNLIAVLLMDTFGRRTLLMVSSAGACFSLLLVSISFHFQGLHYLDELTPLLVFVGLLGYMTTFALGMAGIPWILMSE ILPIDVKASGGSIVTLTNWSMSWLITYTFNFMLQWSSCATFFTFGAINAAAILFTWKLVPETRGRTLEEIQALFT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08930		ERD6	EARLY RESPONSE TO DEHYDRATION ...		Lus10033812 [exp]	0	1
AT2G16980			Major facilitator superfamily ...		Lus10004157 [exp]	1.7	0.8883
AT1G54730			Major facilitator superfamily ...		Lus10035356 [exp]	3.0	0.8401
AT2G38250	Trihelix		Homeodomain-like superfamily p...		Lus10002481 [exp]	6.3	0.8016
AT3G52500			Eukaryotic aspartyl protease f...		Lus10004204 [exp]	8.8	0.7889
AT2G31280	bHLH	bHLH155 ,CPuORF...	conserved peptide upstream ope...		Lus10000609 [exp]	9.4	0.7728
AT2G16980			Major facilitator superfamily ...		Lus10005626 [exp]	10.0	0.8117
AT1G55760			BTB/POZ domain-containing prot...		Lus10008348 [exp]	10.8	0.7841
AT3G14170			Plant protein of unknown funct...		Lus10008138 [exp]	11.0	0.8414
AT4G27290			S-locus lectin protein kinase ...		Lus10038557 [exp]	13.4	0.6993
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Lus10034021 [exp]	15.5	0.7851

Compare expression of checked genes

Lus10033812 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.