Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08920 447 / 2e-154 ESL1 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) AT5G27360 431 / 5e-148 SFP2 Major facilitator superfamily protein (.1) AT5G27350 429 / 3e-147 SFP1 Major facilitator superfamily protein (.1) AT1G08930 426 / 2e-145 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) AT3G05400 421 / 4e-144 Major facilitator superfamily protein (.1.2) AT3G05165 418 / 6e-143 Major facilitator superfamily protein (.1.2.3.4.5) AT3G05160 417 / 1e-142 Major facilitator superfamily protein (.1.2) AT1G54730 408 / 8e-139 Major facilitator superfamily protein (.1.2.3) AT1G08900 405 / 7e-138 Major facilitator superfamily protein (.1.2.3) AT1G08890 400 / 6e-136 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033812 [exp] 435 / 2e-149 AT1G08930 499 / 1e-174 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Lus10035354 [exp] 425 / 2e-145 AT1G54730 615 / 0.0 Major facilitator superfamily protein (.1.2.3) Lus10029960 [exp] 426 / 5e-145 AT1G54730 490 / 3e-170 Major facilitator superfamily protein (.1.2.3) Lus10029962 [exp] 394 / 2e-132 AT1G54730 451 / 2e-155 Major facilitator superfamily protein (.1.2.3) Lus10029966 [exp] 380 / 3e-127 AT1G54730 525 / 0.0 Major facilitator superfamily protein (.1.2.3) Lus10035356 [exp] 375 / 1e-125 AT1G54730 430 / 2e-147 Major facilitator superfamily protein (.1.2.3) Lus10012780 [exp] 371 / 3e-124 AT5G18840 685 / 0.0 Major facilitator superfamily protein (.1) Lus10029961 [exp] 367 / 5e-120 AT1G54730 429 / 3e-144 Major facilitator superfamily protein (.1.2.3) Lus10029964 [exp] 357 / 5e-118 AT1G54730 419 / 2e-142 Major facilitator superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G039900 [exp] 473 / 4e-164 AT1G08920 461 / 1e-159 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.005G037000 [exp] 457 / 5e-158 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027700 [exp] 451 / 1e-155 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.013G027500 [exp] 443 / 1e-152 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.013G027800 [exp] 420 / 2e-143 AT5G27360 405 / 6e-138 Major facilitator superfamily protein (.1) Potri.010G026500 [exp] 374 / 1e-125 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1) Potri.002G212900 [exp] 367 / 8e-123 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.014G136600 [exp] 358 / 4e-119 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.005G040000 [exp] 349 / 6e-116 AT1G54730 429 / 2e-147 Major facilitator superfamily protein (.1.2.3) Potri.002G259900 [exp] 305 / 2e-98 AT1G75220 744 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10033814 pacid=23172781 polypeptide=Lus10033814 locus=Lus10033814.g ID=Lus10033814.BGIv1.0 annot-version=v1.0 ATGGAAGAAGGTGGGTTTCTGGAGAAACCTTTGCTTGGGGACTGTAGCAGCGGCAAAGCAGAAATGACGACGACGTTGAACGGCGGCGGAGAATCATCGT CGCCGGTGACACCCGCCGTTATCTTCAGCACTTTGGTTGCTGTTTGTGGCTCCTTCACTTATGGCTGTGCTATGTCGTACACGTCACCTGCACAAGCTGG AATAACCGAAGATTTGGGACTGTCCATTGCTGCATACTCGATATTTGGTTCAGTAATGACAGTTGGAGGGATGATAGGTGCCTTGTTCTGCGGGAGAATT GCTGCTGTTCTTGGCCGCAAATATACAATGTGGCTGTCGCAGCTTTTCTGCGTAATCGGCTGGCTTGCCATTATACTTGCCAACAGTGACTGGTGGCTTT ACATGGGAAGGCTGTCCATCGGGCTTGGAGTTGGATTCGTCACTTACGTGGTTCCAATATACATAGCAGAAATAACGCCAAAGGAATACAGAGGAGGATT TGCATATGCCAGTCAGAGTCCGATTATGGAGTCAGAGATATTCTTTCCTGACTCCAATCCAGGAGCAATGGAAACCCTTAGATTTCCACATGATCTAACG CTGCTGGCGAACTGCGGGTTTTCAACAATATACTTCGTGGGGAACTCTGTTTCTTGGCGCACATTAGCCGTAATTGGTGTTGTACCTGGTATCCTGCAAC TCATGGGCTTATTCTTTGTGCCCGAGTCTCCAAGATGGCTTGCACAAGTTGGAAGAGGGAAAGAGTTTGAGGCCTCGTTGAAATTGCTGAGAGGGGAGGA TACTGATATCTACCAAGAAAAACAAGAAATCAAAAATATGGTGGATGCATTCGAAGAAGACAAAGTAGATGCCAAAGTGACAGACCTTTTCCAGAAGAAA TATGCATATTCTCTTCTTGTTGGAGTTGGTCTTATGATTTTTCAACAACTTGGAGGCATGTCTGGAGTTGCAATGTACGCTACTTCTGTTGTCGACAGAG CAGGATTTCCGACTAGCATCGGTACCATCATTATCTCCTTAATACAGGTTCCAGCAGCAGCAGCAGGGCTGTTTTTGATGGATTATGCTGGAAGAAGACC TATTCTCATGGGCCTTAATCTTTTCAAGAACTTCACTCCAGTCATGACTGTCCTTGGCATAACTCTGTACATAGCAACTTTCTCAATCGGGATGGCAGGC GTTCCGTGGATTATAATGTCCGAGATATTTCCAATGAGTGTAAAAGCAGTGGCAGGGAGTCTCATAACATTAGTGAGCTGGTCAGCTTCTTGGGTGGTCA GTTACAGTTTCAACTTCATGCTGGAATGGAGCCCAGCAGGGACATTCTTTGTATTTGGTGTGATTTGTGGAGCATCTGTAGTGTTCACCTGGAAACTGGT ACCAGAGACCAAAGGAAGGACACTTGAAGAGATACAGGCATCAATGATAGGCTTGCACTAG
AA sequence Show only first row Show all	>Lus10033814 pacid=23172781 polypeptide=Lus10033814 locus=Lus10033814.g ID=Lus10033814.BGIv1.0 annot-version=v1.0 MEEGGFLEKPLLGDCSSGKAEMTTTLNGGGESSSPVTPAVIFSTLVAVCGSFTYGCAMSYTSPAQAGITEDLGLSIAAYSIFGSVMTVGGMIGALFCGRI AAVLGRKYTMWLSQLFCVIGWLAIILANSDWWLYMGRLSIGLGVGFVTYVVPIYIAEITPKEYRGGFAYASQSPIMESEIFFPDSNPGAMETLRFPHDLT LLANCGFSTIYFVGNSVSWRTLAVIGVVPGILQLMGLFFVPESPRWLAQVGRGKEFEASLKLLRGEDTDIYQEKQEIKNMVDAFEEDKVDAKVTDLFQKK YAYSLLVGVGLMIFQQLGGMSGVAMYATSVVDRAGFPTSIGTIIISLIQVPAAAAGLFLMDYAGRRPILMGLNLFKNFTPVMTVLGITLYIATFSIGMAG VPWIIMSEIFPMSVKAVAGSLITLVSWSASWVVSYSFNFMLEWSPAGTFFVFGVICGASVVFTWKLVPETKGRTLEEIQASMIGLH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08920		ESL1	ERD (early response to dehydra...		Lus10033814 [exp]	0	1
AT2G37130			Peroxidase superfamily protein...		Lus10015074 [exp]	8.0	0.9187
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034475 [exp]	10.6	0.9236
AT3G11550		CASP2	Casparian strip membrane domai...		Lus10021333 [exp]	13.6	0.9172
AT5G41990		EIP1, ATWNK8, W...	EMF1-Interacting Protein 1, wi...		Lus10033225 [exp]	13.9	0.8865
AT3G57040		ATRR4, ARR9	RESPONSE REGULATOR 4, response...		Lus10002750 [exp]	23.1	0.8920
AT2G32030			Acyl-CoA N-acyltransferases (N...		Lus10006668 [exp]	27.1	0.9137
AT2G36020		HVA22J	HVA22-like protein J (.1)		Lus10021299 [exp]	29.8	0.9110
AT1G79690		ATNUDT3	nudix hydrolase homolog 3 (.1)		Lus10002329 [exp]	30.8	0.8860
AT2G39920			HAD superfamily, subfamily III...		Lus10028259 [exp]	32.9	0.9100
AT1G48960			Adenine nucleotide alpha hydro...		Lus10027236 [exp]	33.5	0.9086

Compare expression of checked genes

Lus10033814 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.